CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11628
EES13064
KXG27269
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	KXG27269	AT1G47128.1	18676877
AT1G21750.1	EES11628	AT3G19390.1	18676877
AT1G21750.1	EES13064	AT3G19390.1	18676877
AT1G21750.1	EES11628	AT3G19400.1	18676877
AT1G21750.1	EES13064	AT3G19400.1	18676877
AT1G21750.1	OQU78269	AT5G42980.1	15352244
AT1G21750.1	KXG27269	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	77.03	77.18
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	76.83	76.98
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	76.83	76.83
Os04t0436300-01	Rice	endoplasmic reticulum	41.31	73.04
Bra016405.1-P	Field mustard	endoplasmic reticulum	54.05	55.89
Bra012293.1-P	Field mustard	endoplasmic reticulum	52.9	55.24
KXG28001	Sorghum	endoplasmic reticulum	54.83	55.15
Solyc06g060290.2.1	Tomato	plastid	46.53	55.02
PGSC0003DMT400045299	Potato	endoplasmic reticulum	52.12	54.33
AT1G21750.1	Thale cress	endoplasmic reticulum	52.51	54.29
Bra017948.1-P	Field mustard	endoplasmic reticulum	52.12	54.22
PGSC0003DMT400010624	Potato	endoplasmic reticulum	50.97	53.44
AT1G77510.1	Thale cress	endoplasmic reticulum	50.58	51.57
Bra015665.1-P	Field mustard	endoplasmic reticulum	50.58	51.47
VIT_07s0031g02660.t01	Wine grape	endoplasmic reticulum	49.03	50.8
PGSC0003DMT400060279	Potato	cytosol	17.57	50.0
Bra008311.1-P	Field mustard	endoplasmic reticulum	49.03	49.71
KRH64647	Soybean	cytosol, mitochondrion	20.08	49.06
Solyc06g005940.2.1	Tomato	nucleus, plastid	46.72	48.5
PGSC0003DMT400036388	Potato	endoplasmic reticulum	45.37	48.06
Solyc05g056400.2.1	Tomato	plastid	48.26	47.26
CDX79207	Canola	cytosol	11.0	47.11
Solyc05g018700.2.1	Tomato	plastid	43.24	45.16
HORVU2Hr1G076360.1	Barley	endoplasmic reticulum	40.15	40.0
EES06089	Sorghum	endoplasmic reticulum	29.15	26.4
EES00714	Sorghum	endoplasmic reticulum	18.53	26.09
EES19066	Sorghum	endoplasmic reticulum	18.34	25.89
EER92421	Sorghum	endoplasmic reticulum	7.14	24.67
EES12182	Sorghum	endoplasmic reticulum	19.3	23.92
EER87912	Sorghum	endoplasmic reticulum	24.52	23.3
EER96832	Sorghum	endoplasmic reticulum	19.5	23.01
OQU85098	Sorghum	endoplasmic reticulum	20.08	21.22

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	UniProt:A0A1B6PL31	ncoils:Coil	InterPro:Disulphide_isomerase	GO:GO:0003674
GO:GO:0003756	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	EnsemblPlants:KXG26345	ProteinID:KXG26345	ProteinID:KXG26345.1	PFAM:PF00085	PFAM:PF13848
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase
EnsemblPlantsGene:SORBI_3006G085700	SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00081AB4BB	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:45514802..45518642

Molecular Weight (calculated)

56856.1 Da

IEP (calculated)

4.367

GRAVY (calculated)

-0.127

Length

518 amino acids

Sequence
(BLAST)

001: MAVSLVLPFT ILLAAVLLSG PVLAEVETAV ELGEVVLTLD ASNFSEVVAK HQFIVVEFYA PWCGHCKQLA PEYEKAAAVL RNHDPPLVLA KVDAYDERNK
101: EIKDKYQVHA YPTIKIIENG GKDVRGYGGP RDADGIVGYL KKQVGPASIE LSSAEAAQSS IGDKGVVLVG VFPEFAGVEY ENFMAVAEKK RSDYDFFHTS
201: DASILPRGDQ TIKGPVVRLF KPFDELFADS RDFDTDALEK FIDVSGFPAV VTFDADPTNH KFLERYYSTP SAKAMLFLNF SDDRVEAFKN QIQEAAKKFS
301: ANNISFLIGD VEAADRAFQY FGLKENDAPL LFVIAQGGKY LNPTIDPDQI IPWLKEYIYG NLTPYVKSEP IPKVNDQPVK VVVADSIDDV VFNSGKNVLL
401: EFYAPWCGHC RKLAPILEEV AVSLQDDEDV VIAKMDGTAN DIPTDLAVEG YPTIYFYSTT GDLYSYNGGR TAEDIISFIK KNKGPRAGAV DEVTQTDAGA
501: VEEGTAPSST SELPKDEL

Best Arabidopsis Sequence Match ( AT1G77510.1 )
(BLAST)

001: MAFKGFACFS ILLLLSLFVS SIRSEETKEF VLTLDHSNFT ETISKHDFIV VEFYAPWCGH CQKLAPEYEK AASELSSHNP PLALAKIDAS EEANKEFANE
101: YKIQGFPTLK ILRNGGKSVQ DYNGPREAEG IVTYLKKQSG PASVEIKSAD SATEVVGEKN VVAVGVFPKL SGDEFDSFMA LAEKLRADYD FAHTLDAKFL
201: PRGESVEGPA VRLFKPFDEL FVDSKDFNGE ALEKFVKESS IPLVTVFDSD PNNHPYVAKF FESPATKAMM FVNFTGATAE ALKSKYREVA TSNKDQSLAF
301: LVGDAESSQG AFQYFGLEES QVPLIIIQTP DNKKYLKVNV EVDQIESWFK DFQDGKVAVH KKSQPIPAEN NEPVKVVVAE SLDDIVFKSG KNVLIEFYAP
401: WCGHCQKLAP ILDEVALSFQ NDPSVIIAKL DATANDIPSD TFDVKGFPTI YFRSASGNVV VYEGDRTKED FINFVEKNSE KKPTSHGEES TKSEEPKKTE
501: ETAAKDEL

Arabidopsis Description

PDIL1-2Protein disulfide isomerase-like 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.