Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 8
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19390.1 | KXG26345 | AT1G21750.1 | 18676877 |
| AT3G19390.1 | KXG28001 | AT1G21750.1 | 18676877 |
| AT3G19390.1 | KXG27269 | AT1G47128.1 | 26016527 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d001900_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 89.29 | 89.68 |
| Zm00001d026577_P001 | Maize | extracellular, golgi, plasma membrane | 89.72 | 89.15 |
| TraesCS2B01G576300.1 | Wheat | unclear | 80.51 | 80.17 |
| TraesCS2A01G545700.1 | Wheat | unclear | 80.3 | 79.45 |
| TraesCS2D01G546600.1 | Wheat | plasma membrane, vacuole | 80.73 | 79.37 |
| Os04t0670200-02 | Rice | extracellular | 82.44 | 78.25 |
| HORVU2Hr1G121440.2 | Barley | endoplasmic reticulum | 77.94 | 72.8 |
| EES11628 | Sorghum | extracellular | 64.24 | 63.69 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 55.89 | 61.27 |
| KXG27269 | Sorghum | endoplasmic reticulum | 60.39 | 60.78 |
| VIT_07s0031g00050.t01 | Wine grape | nucleus | 42.61 | 60.3 |
| Solyc01g107760.2.1 | Tomato | extracellular | 59.74 | 59.36 |
| PGSC0003DMT400066566 | Potato | endoplasmic reticulum | 59.74 | 59.36 |
| PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 45.4 | 58.73 |
| Solyc02g093040.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 45.4 | 58.4 |
| PGSC0003DMT400053921 | Potato | extracellular | 44.97 | 57.69 |
| KRH57968 | Soybean | endoplasmic reticulum | 44.75 | 57.1 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 53.96 | 56.12 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 53.75 | 55.9 |
| CDY46179 | Canola | endoplasmic reticulum | 53.75 | 55.78 |
| KRH07581 | Soybean | endoplasmic reticulum | 43.68 | 55.74 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 53.53 | 55.56 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 53.75 | 55.53 |
| KRH04538 | Soybean | extracellular | 43.47 | 55.46 |
| AT4G36880.1 | Thale cress | vacuole | 44.54 | 55.32 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 43.68 | 54.55 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 52.46 | 54.44 |
| CDY22445 | Canola | vacuole | 43.47 | 54.28 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 43.04 | 53.74 |
| CDX75633 | Canola | vacuole | 43.04 | 53.74 |
| Bra011746.1-P | Field mustard | vacuole | 42.61 | 53.21 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 41.11 | 53.04 |
| CDY44047 | Canola | vacuole | 43.47 | 52.86 |
| Solyc03g044230.1.1 | Tomato | extracellular | 42.83 | 52.77 |
| EER88857 | Sorghum | endoplasmic reticulum | 41.97 | 52.69 |
| CDY50154 | Canola | endoplasmic reticulum | 49.46 | 52.5 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.25 | 52.27 |
| KXG19778 | Sorghum | cytosol, nucleus, plastid | 34.26 | 51.95 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 49.04 | 51.93 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 39.19 | 51.12 |
| EES10550 | Sorghum | extracellular | 36.19 | 49.71 |
| KXG19775 | Sorghum | extracellular | 36.19 | 49.71 |
| EER89590 | Sorghum | extracellular | 35.76 | 49.12 |
| KXG19777 | Sorghum | extracellular | 35.55 | 48.82 |
| CDX99227 | Canola | endoplasmic reticulum | 52.89 | 48.72 |
| KXG25862 | Sorghum | endoplasmic reticulum | 35.12 | 48.66 |
| KXG25863 | Sorghum | endoplasmic reticulum | 35.12 | 48.66 |
| KXG25861 | Sorghum | endoplasmic reticulum | 35.12 | 48.66 |
| EER88858 | Sorghum | golgi, vacuole | 41.33 | 48.61 |
| EES10463 | Sorghum | endoplasmic reticulum | 35.12 | 48.52 |
| EES02142 | Sorghum | vacuole | 39.19 | 48.41 |
| EES10461 | Sorghum | endoplasmic reticulum | 34.9 | 48.22 |
| OQU81187 | Sorghum | endoplasmic reticulum, extracellular | 35.55 | 47.84 |
| OQU81188 | Sorghum | cytosol, nucleus, plastid | 28.27 | 47.83 |
| EES15197 | Sorghum | endoplasmic reticulum | 37.9 | 47.58 |
| EES01927 | Sorghum | extracellular | 37.47 | 47.43 |
| KXG21060 | Sorghum | endoplasmic reticulum, golgi, vacuole | 37.05 | 46.63 |
| EER90747 | Sorghum | endoplasmic reticulum | 37.9 | 46.46 |
| EES07368 | Sorghum | extracellular | 35.12 | 46.07 |
| EES09937 | Sorghum | endoplasmic reticulum | 36.4 | 45.82 |
| EER93437 | Sorghum | endoplasmic reticulum | 33.19 | 43.91 |
| EES18460 | Sorghum | endoplasmic reticulum | 43.04 | 43.51 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | EntrezGene:8070301 | UniProt:C5YA35 | EnsemblPlants:EES13064 |
| ProteinID:EES13064 | ProteinID:EES13064.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004197 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005764 |
| GO:GO:0005773 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF343 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | EnsemblPlantsGene:SORBI_3006G260300 | SUPFAM:SSF54001 | SUPFAM:SSF57277 |
| unigene:Sbi.14798 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001A8755D | RefSeq:XP_002448736.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:-:59555668..59559490
Molecular Weight (calculated)
50210.3 Da
IEP (calculated)
6.017
GRAVY (calculated)
-0.254
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALGRGIGL LFLGVLLLAV AGAASAAPGG MSIISYNEEH GARGLERTEA EVRAMYELWL VEHGRRVSNV LGEHDSRFRV FWDNLRFVDA HNERAGEHGF
101: RLGMNQFADL TNDEFRAAYL GARIPAARSG NAVGEMYRHD GAEELPESVD WREKGAVAPV KNQGQCGSCW AFSAVSSVES INQIVTGEMV TLSEQELVEC
201: STDGGNSGCN GGLMDAAFNF IIKNGGIDTE DDYPYKAVDG KCDINRRNAK VVSIDAFEDV PENDEKSLQK AVAHQPVSVA IEAGGRQFQL YKSGVFSGSC
301: TTNLDHGVVA VGYGTENGKD YWIVRNSWGP KWGEAGYIRM ERNINATTGK CGIAMMASYP TKKGANPPKP SPTPPTPPPP VAPDHVCDEN FVCSAGSTCC
401: CAFGFRNVCL VWGCCPIEGA TCCKDHASCC PPDYPVCNIR ARTCSVSKNS PLSVKALKRT LAKLNTA
101: RLGMNQFADL TNDEFRAAYL GARIPAARSG NAVGEMYRHD GAEELPESVD WREKGAVAPV KNQGQCGSCW AFSAVSSVES INQIVTGEMV TLSEQELVEC
201: STDGGNSGCN GGLMDAAFNF IIKNGGIDTE DDYPYKAVDG KCDINRRNAK VVSIDAFEDV PENDEKSLQK AVAHQPVSVA IEAGGRQFQL YKSGVFSGSC
301: TTNLDHGVVA VGYGTENGKD YWIVRNSWGP KWGEAGYIRM ERNINATTGK CGIAMMASYP TKKGANPPKP SPTPPTPPPP VAPDHVCDEN FVCSAGSTCC
401: CAFGFRNVCL VWGCCPIEGA TCCKDHASCC PPDYPVCNIR ARTCSVSKNS PLSVKALKRT LAKLNTA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.