Factsheet for Os04t0670200-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 2
golgi 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

extracellular: 21255809
nucleus: 23303719
extracellular: 24083427
plastid: 27992503

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21255809 doi

T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki

National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0554900-01
Os04t0436300-01
Os11t0199200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19390.1	Os02t0554900-01	AT1G21750.1	18676877
AT3G19390.1	Os04t0436300-01	AT1G21750.1	18676877
AT3G19390.1	Os11t0199200-01	AT1G21750.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G545700.1	Wheat	unclear	80.28	83.69
TraesCS2B01G576300.1	Wheat	unclear	79.47	83.37
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	79.67	82.53
EES13064	Sorghum	extracellular, plasma membrane, vacuole	78.25	82.44
Zm00001d001900_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	77.64	82.15
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	77.44	81.06
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	79.88	78.6
Os04t0670500-01	Rice	extracellular	67.48	67.76
VIT_03s0180g00010.t01	Wine grape	extracellular	53.66	61.97
VIT_07s0031g00050.t01	Wine grape	nucleus	41.26	61.52
PGSC0003DMT400066566	Potato	endoplasmic reticulum	57.11	59.79
Solyc01g107760.2.1	Tomato	extracellular	56.91	59.57
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	42.89	58.13
PGSC0003DMT400064314	Potato	endoplasmic reticulum, extracellular, vacuole	42.48	57.89
CDX95457	Canola	endoplasmic reticulum, extracellular, vacuole	52.03	57.02
PGSC0003DMT400053921	Potato	extracellular	42.07	56.87
AT3G19390.1	Thale cress	endoplasmic reticulum	52.24	56.86
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	51.83	56.79
CDY46179	Canola	endoplasmic reticulum	50.81	55.56
Bra022418.1-P	Field mustard	endoplasmic reticulum	50.81	55.56
KRH57968	Soybean	endoplasmic reticulum	41.26	55.46
Bra038206.1-P	Field mustard	extracellular, plasma membrane, vacuole	50.41	55.11
AT3G19400.1	Thale cress	endoplasmic reticulum, vacuole	40.45	54.97
CDY50154	Canola	endoplasmic reticulum	48.17	53.86
KRH07581	Soybean	endoplasmic reticulum	40.04	53.83
KRH04538	Soybean	extracellular	40.04	53.83
Bra038208.1-P	Field mustard	endoplasmic reticulum	48.17	53.74
CDX95451	Canola	endoplasmic reticulum, extracellular, vacuole	47.36	52.95
Solyc03g044230.1.1	Tomato	extracellular	40.45	52.51
AT4G36880.1	Thale cress	vacuole	39.63	51.86
Bra010592.1-P	Field mustard	extracellular, golgi, vacuole	39.02	51.34
CDY22445	Canola	vacuole	39.02	51.34
CDX75633	Canola	vacuole	38.82	51.07
Bra011746.1-P	Field mustard	vacuole	38.01	50.0
CDX69285	Canola	endoplasmic reticulum, vacuole	38.01	50.0
CDY44047	Canola	vacuole	38.82	49.74
Os04t0206300-00	Rice	extracellular	34.15	49.56
CDX99227	Canola	endoplasmic reticulum	50.2	48.72
Os05t0108600-01	Rice	extracellular	35.16	48.32
Os04t0208200-01	Rice	extracellular	34.15	48.14
Os01t0971400-01	Rice	extracellular	35.37	47.67
Os11t0255300-01	Rice	extracellular	35.57	46.3
Os01t0907600-01	Rice	extracellular	34.55	45.82
Os12t0273800-00	Rice	extracellular	32.32	45.43
Os05t0508300-01	Rice	plasma membrane	40.24	44.0
Os02t0715000-01	Rice	endoplasmic reticulum	32.32	43.44
Os08t0556900-01	Rice	extracellular	33.13	42.34

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	EntrezGene:4337351	MapMan:50.3.4	UniProt:A0A0P0WGF4	ProteinID:BAS91552.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277
EnsemblPlantsGene:Os04g0670200	EnsemblPlants:Os04t0670200-02	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705
ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF343	InterPro:Papain_like_cys_pep_sf
InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29
SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	TMHMM:TMhelix
UniParc:UPI000393A2C6	SEG:seg	:	:	:	:

Description

Similar to Oryzain beta chain precursor (EC 3.4.22.-). (Os04t0670200-01);Granulin domain containing protein. (Os04t0670200-02)

Coordinates

chr4:-:34173356..34176706

Molecular Weight (calculated)

52870.1 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.429

Length

492 amino acids

Sequence
(BLAST)

001: RKKKGGKEKR RKAKRLERDA RLHVAAMAAR AAAAAFLLLL IVGAATAAPD MSIISYNAEH GARGLEEGPT EAEARAAYDL WLAENGGGSP NALGGEHERR
101: FLVFWDNLKF VDAHNARADE RGGFRLGMNR FADLTNEEFR ATFLGAKVAE RSRAAGERYR HDGVEELPES VDWREKGAVA PVKNQGQCGS CWAFSAVSTV
201: ESINQLVTGE MITLSEQELV ECSTNGQNSG CNGGLMDDAF DFIIKNGGID TEDDYPYKAV DGKCDINREN AKVVSIDGFE DVPQNDEKSL QKAVAHQPVS
301: VAIEAGGREF QLYHSGVFSG RCGTSLDHGV VAVGYGTDNG KDYWIVRNSW GPKWGESGYV RMERNINVTT GKCGIAMMAS YPTKSGANPP KPSPTPPTPP
401: TPPPPSAPDH VCDDNFSCPA GSTCCCAFGF RNLCLVWGCC PVEGATCCKD HASCCPPDYP VCNTRAGTCS ASKNSPLSVK ALKRTLAKLN TA

Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)

001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA

Arabidopsis Description

RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.