Factsheet for VIT_03s0180g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	nucleus
Plant-mPloc:	vacuole
PProwler:	mitochondrion
YLoc:	cytosol

extracellular: 30448023

msms PMID: 30448023 doi

S Belchí-Navarro, L Almagro, R Bru-Martínez, MA Pedreño

Department of Plant Biology, Faculty of Biology, University of Murcia, Campus de Espinardo, E-30100, Murcia, Spain., Department of Plant Biology, Faculty of Biology, University of Murcia, Campus de Espinardo, E-30100, Murcia, Spain. Electronic address: lorena.almagro@um.es., Plant Proteomics and Functional Genomics Group, Department of Agrochemistry and Biochemistry, Faculty of Science, University of Alicante and Instituto de Investigación Sanitaria y Biomédica de Alicante ISABIAL-FISABIO, Alicante, Spain.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09990.t01	Wine grape	endoplasmic reticulum	77.46	70.66
VIT_07s0031g00050.t01	Wine grape	nucleus	52.58	67.88
PGSC0003DMT400066566	Potato	endoplasmic reticulum	74.41	67.45
Solyc01g107760.2.1	Tomato	extracellular	74.18	67.23
TraesCS2D01G547600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.05	61.41
TraesCS2B01G576300.1	Wheat	unclear	62.91	57.14
TraesCS7D01G265100.1	Wheat	cytosol, nucleus, plastid	34.51	56.98
Zm00001d001900_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	61.97	56.77
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	62.44	56.6
TraesCS2A01G545700.1	Wheat	unclear	62.68	56.57
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	62.91	56.42
EES13064	Sorghum	extracellular, plasma membrane, vacuole	61.27	55.89
TraesCS2B01G577300.1	Wheat	extracellular, golgi	60.8	55.22
TraesCS7B01G162200.1	Wheat	endoplasmic reticulum	58.69	54.23
TraesCS5D01G149800.1	Wheat	endoplasmic reticulum	59.39	54.06
TraesCS2A01G546300.1	Wheat	endoplasmic reticulum, vacuole	59.39	53.94
VIT_12s0028g02250.t01	Wine grape	cytosol	37.56	53.87
TraesCS2A01G546700.1	Wheat	endoplasmic reticulum	59.15	53.85
Os04t0670200-02	Rice	extracellular	61.97	53.66
TraesCS2B01G577500.1	Wheat	endoplasmic reticulum	58.92	53.63
TraesCS2D01G547800.1	Wheat	endoplasmic reticulum, extracellular	58.92	53.63
HORVU7Hr1G055310.1	Barley	extracellular	58.45	53.32
TraesCS7A01G264200.1	Wheat	endoplasmic reticulum	59.15	53.16
EES11628	Sorghum	extracellular	58.45	52.87
VIT_18s0122g00790.t01	Wine grape	nucleus	41.55	52.68
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	60.8	51.8
HORVU2Hr1G121150.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	58.69	51.44
VIT_03s0038g04000.t01	Wine grape	vacuole	42.49	51.42
Os04t0670500-01	Rice	extracellular	58.69	51.02
VIT_17s0000g09770.t01	Wine grape	endoplasmic reticulum	42.02	49.72
VIT_10s0003g01100.t01	Wine grape	extracellular	39.67	49.71
VIT_12s0028g02270.t01	Wine grape	endoplasmic reticulum, extracellular	38.73	48.39
VIT_12s0028g02290.t01	Wine grape	endoplasmic reticulum, extracellular	38.73	48.39
VIT_12s0028g02300.t01	Wine grape	endoplasmic reticulum, extracellular	38.26	47.8
VIT_01s0137g00330.t01	Wine grape	endoplasmic reticulum	39.67	47.08
VIT_12s0028g02260.t01	Wine grape	endoplasmic reticulum, extracellular	35.45	46.89
VIT_18s0001g13270.t01	Wine grape	extracellular	44.13	43.12

Protein Annotations

EntrezGene:100252080	wikigene:100252080	Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	MEROPS:C01.029
ProteinID:CCB62361	ProteinID:CCB62361.1	UniProt:F6I5Z3	EMBL:FN596754	GO:GO:0003674	GO:GO:0003824
GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277	EntrezGene:LOC100252080	wikigene:LOC100252080
PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639
ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF352	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS
InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645
SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	TIGR:TC52318	TIGR:TC63313	TIGR:TC66158
UniParc:UPI000210A292	ArrayExpress:VIT_03s0180g00010	EnsemblPlantsGene:VIT_03s0180g00010	EnsemblPlants:VIT_03s0180g00010.t01	unigene:Vvi.7384	RefSeq:XP_002285299
RefSeq:XP_002285299.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:5934501..5937492

Molecular Weight (calculated)

47381.1 Da

IEP (calculated)

4.729

GRAVY (calculated)

-0.557

Length

426 amino acids

Sequence
(BLAST)

001: KRTDAEVMAV YEAWLVKHGK SYNALGERER RFEIFKDNLR FIEEHNAVNR TYKVGLNRFA DLTNEEYRSR YLGRRDETRR GLRASRVSDR YSFRAGEDLP
101: ESVDWREKGA VVPVKDQGNC GSCWAFSTIA AVEGINQIAT GDLISLSEQE LVDCDKSYNQ GCNGGLMDYA FEFIINNGGI DSEEDYPYRA ADTTCDPNRK
201: NARVVSIDGY EDVPQNDERS LKKAVANQPV SVAIEAGGRA FQLYQSGVFT GQCGTQLDHG VVAVGYGTEN SVDYWIVRNS WGPNWGESGY IKLERNLAGT
301: ETGKCGIAIE PSYPIKNGQN PPNPGPSPPS PSKPSVVCDE YYTCPEESTC CCIYEYAGFC FEWGCCPLEG ATCCDDHYSC CPHEYPVCDV DAGTCQMSKG
401: NPLSVKAWRR TPARPVFAPR PVIEVI

Best Arabidopsis Sequence Match ( AT1G47128.1 )
(BLAST)

001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA

Arabidopsis Description

RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.