Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- vacuole 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_13s0106g00770.t01 | |
| VIT_14s0066g02380.t01 | |
| VIT_19s0015g00810.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20850.1 | VIT_13s0106g00770.t01 | AT3G01340.1 | 21798944 |
| AT1G20850.1 | VIT_14s0066g02380.t01 | AT3G01340.1 | 21798944 |
| AT1G20850.1 | VIT_19s0015g00810.t01 | AT3G01340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60879 | Soybean | endoplasmic reticulum | 82.74 | 79.66 |
| KRH51560 | Soybean | endoplasmic reticulum | 81.85 | 78.57 |
| KRH51561 | Soybean | endoplasmic reticulum | 81.85 | 78.57 |
| KRH60878 | Soybean | endoplasmic reticulum | 81.25 | 78.22 |
| VIT_03s0038g04000.t01 | Wine grape | vacuole | 80.06 | 76.42 |
| CDY01351 | Canola | endoplasmic reticulum | 74.4 | 71.23 |
| Bra016447.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 75.6 | 70.95 |
| CDY31861 | Canola | endoplasmic reticulum | 74.11 | 70.54 |
| GSMUA_Achr3P03740_001 | Banana | endoplasmic reticulum | 74.11 | 70.54 |
| Bra012252.1-P | Field mustard | endoplasmic reticulum | 73.81 | 70.45 |
| AT1G20850.1 | Thale cress | endoplasmic reticulum | 73.21 | 69.1 |
| CDX96617 | Canola | endoplasmic reticulum | 66.67 | 68.5 |
| CDY33651 | Canola | endoplasmic reticulum | 65.77 | 67.79 |
| TraesCS1A01G027300.1 | Wheat | endoplasmic reticulum | 69.94 | 66.95 |
| TraesCS1B01G033200.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 69.94 | 66.76 |
| TraesCS1D01G026500.1 | Wheat | endoplasmic reticulum | 69.64 | 66.67 |
| TraesCS5D01G152400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 68.75 | 64.89 |
| TraesCS5B01G138300.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 68.45 | 64.61 |
| Os05t0108600-01 | Rice | extracellular | 68.75 | 64.53 |
| KXG21060 | Sorghum | endoplasmic reticulum, golgi, vacuole | 70.54 | 63.88 |
| Os01t0971400-01 | Rice | extracellular | 69.35 | 63.84 |
| EES02142 | Sorghum | vacuole | 70.24 | 62.43 |
| Zm00001d011787_P001 | Maize | extracellular | 70.83 | 61.82 |
| TraesCS5A01G138700.1 | Wheat | plastid | 68.75 | 61.27 |
| Zm00001d035689_P001 | Maize | extracellular | 68.15 | 60.74 |
| EES07368 | Sorghum | extracellular | 61.31 | 57.87 |
| Zm00001d017834_P001 | Maize | extracellular | 52.68 | 56.91 |
| CDY31498 | Canola | cytosol | 50.3 | 56.52 |
| Os02t0715000-01 | Rice | endoplasmic reticulum | 61.31 | 56.28 |
| TraesCS6B01G308300.1 | Wheat | extracellular, vacuole | 59.82 | 55.99 |
| TraesCS6A01G279500.1 | Wheat | endoplasmic reticulum, extracellular | 59.52 | 55.56 |
| HORVU6Hr1G070320.2 | Barley | endoplasmic reticulum, extracellular | 59.82 | 55.22 |
| VIT_07s0031g00050.t01 | Wine grape | nucleus | 52.08 | 53.03 |
| VIT_12s0028g02250.t01 | Wine grape | cytosol | 46.73 | 52.86 |
| HORVU1Hr1G003940.6 | Barley | endoplasmic reticulum | 58.04 | 52.85 |
| TraesCS6D01G259900.1 | Wheat | plastid | 59.23 | 52.65 |
| VIT_12s0028g02270.t01 | Wine grape | endoplasmic reticulum, extracellular | 50.3 | 49.56 |
| VIT_12s0028g02300.t01 | Wine grape | endoplasmic reticulum, extracellular | 49.7 | 48.97 |
| VIT_12s0028g02290.t01 | Wine grape | endoplasmic reticulum, extracellular | 49.4 | 48.68 |
| VIT_17s0000g09770.t01 | Wine grape | endoplasmic reticulum | 51.49 | 48.06 |
| VIT_10s0003g01100.t01 | Wine grape | extracellular | 48.51 | 47.94 |
| VIT_12s0028g02260.t01 | Wine grape | endoplasmic reticulum, extracellular | 45.83 | 47.83 |
| VIT_01s0137g00330.t01 | Wine grape | endoplasmic reticulum | 50.89 | 47.63 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 52.68 | 41.55 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 56.55 | 40.69 |
| VIT_18s0001g13270.t01 | Wine grape | extracellular | 46.13 | 35.55 |
Protein Annotations
| EntrezGene:100251307 | wikigene:100251307 | MapMan:19.4.1.1 | MapMan:27.2.10 | Gene3D:3.90.70.10 | MEROPS:C01.065 |
| ProteinID:CCB62673 | ProteinID:CCB62673.1 | UniProt:F6I6V5 | EMBL:FN596759 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004197 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005764 | GO:GO:0005773 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0051603 | EntrezGene:LOC100251307 | wikigene:LOC100251307 | PFAM:PF00112 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF357 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | TIGR:TC62197 | UniParc:UPI00019851B7 | ArrayExpress:VIT_18s0122g00790 |
| EnsemblPlantsGene:VIT_18s0122g00790 | EnsemblPlants:VIT_18s0122g00790.t01 | unigene:Vvi.15382 | RefSeq:XP_002273243 | RefSeq:XP_002273243.2 | : |
Description
No Description!
Coordinates
chr18:-:582136..583697
Molecular Weight (calculated)
37618.2 Da
IEP (calculated)
5.903
GRAVY (calculated)
-0.495
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVFAYSAFA RDFSIVGYSP DDLTSMDKLT DLFESWMSKH GKSYRSFEEK LHRFEVFQDN LKHIDETNKK VSSYWLGLNE FADLSHEEFK RKYLGLKIEL
101: PKRRDSPEEF SYKDVADLPK SVDWRKKGAV AHVKNQGACG SCWAFSTVAA VEGINQIVTG NLTALSEQEL IDCDKPFNNG CNGGLMDYAF AFIISNGGLR
201: KEEDYPYVME EGTCGEKKEE LEVVTISGYH DVPEDNEQSF LKALANQPLS VAIEASSRGF QFYSGGIFNG HCGTELDHGV AAVGYGTSKG VDYITVKNSW
301: GSKWGEKGYI RMKRNVGKPE GICGIYKMAS YPTKNK
101: PKRRDSPEEF SYKDVADLPK SVDWRKKGAV AHVKNQGACG SCWAFSTVAA VEGINQIVTG NLTALSEQEL IDCDKPFNNG CNGGLMDYAF AFIISNGGLR
201: KEEDYPYVME EGTCGEKKEE LEVVTISGYH DVPEDNEQSF LKALANQPLS VAIEASSRGF QFYSGGIFNG HCGTELDHGV AAVGYGTSKG VDYITVKNSW
301: GSKWGEKGYI RMKRNVGKPE GICGIYKMAS YPTKNK
001: MAFSAPSLSK FSLLVAISAS ALLCCAFARD FSIVGYTPEH LTNTDKLLEL FESWMSEHSK AYKSVEEKVH RFEVFRENLM HIDQRNNEIN SYWLGLNEFA
101: DLTHEEFKGR YLGLAKPQFS RKRQPSANFR YRDITDLPKS VDWRKKGAVA PVKDQGQCGS CWAFSTVAAV EGINQITTGN LSSLSEQELI DCDTTFNSGC
201: NGGLMDYAFQ YIISTGGLHK EDDYPYLMEE GICQEQKEDV ERVTISGYED VPENDDESLV KALAHQPVSV AIEASGRDFQ FYKGGVFNGK CGTDLDHGVA
301: AVGYGSSKGS DYVIVKNSWG PRWGEKGFIR MKRNTGKPEG LCGINKMASY PTKTK
101: DLTHEEFKGR YLGLAKPQFS RKRQPSANFR YRDITDLPKS VDWRKKGAVA PVKDQGQCGS CWAFSTVAAV EGINQITTGN LSSLSEQELI DCDTTFNSGC
201: NGGLMDYAFQ YIISTGGLHK EDDYPYLMEE GICQEQKEDV ERVTISGYED VPENDDESLV KALAHQPVSV AIEASGRDFQ FYKGGVFNGK CGTDLDHGVA
301: AVGYGSSKGS DYVIVKNSWG PRWGEKGFIR MKRNTGKPEG LCGINKMASY PTKTK
Arabidopsis Description
XCP1Cysteine protease XCP1 [Source:UniProtKB/Swiss-Prot;Acc:O65493]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.