Factsheet for VIT_18s0001g09990.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0180g00010.t01	Wine grape	extracellular	70.66	77.46
CDX71540	Canola	extracellular	71.09	72.17
Bra033657.1-P	Field mustard	extracellular	70.88	71.96
CDY22370	Canola	extracellular	70.88	71.96
VIT_07s0031g00050.t01	Wine grape	nucleus	50.75	71.82
KXG27269	Sorghum	endoplasmic reticulum	71.09	71.55
AT5G43060.1	Thale cress	endoplasmic reticulum	70.66	71.27
KRH05634	Soybean	endoplasmic reticulum	72.59	71.22
GSMUA_Achr10P...	Banana	endoplasmic reticulum	71.52	71.22
CDY17093	Canola	endoplasmic reticulum	69.59	71.12
Zm00001d002065_P006	Maize	plasma membrane	70.88	70.73
CDY17044	Canola	endoplasmic reticulum	69.38	70.59
CDY63586	Canola	endoplasmic reticulum	69.38	70.59
Bra040749.1-P	Field mustard	endoplasmic reticulum	68.95	70.46
CDY25228	Canola	extracellular	69.38	70.43
CDY06760	Canola	endoplasmic reticulum	68.74	70.24
Bra014057.1-P	Field mustard	endoplasmic reticulum	68.95	70.15
GSMUA_Achr4P06140_001	Banana	endoplasmic reticulum	70.24	69.94
AT1G47128.1	Thale cress	endoplasmic reticulum	68.95	69.7
GSMUA_Achr1P15920_001	Banana	endoplasmic reticulum	70.02	69.57
GSMUA_Achr4P12910_001	Banana	endoplasmic reticulum	70.45	69.56
GSMUA_Achr3P01000_001	Banana	endoplasmic reticulum	69.81	69.51
KRH15406	Soybean	nucleus	73.02	68.75
TraesCS2D01G513600.1	Wheat	endoplasmic reticulum, golgi, vacuole	67.67	68.25
TraesCS2B01G540100.2	Wheat	golgi	67.67	68.25
Zm00001d026458_P002	Maize	endoplasmic reticulum	70.02	68.12
TraesCS2A01G512100.1	Wheat	extracellular	67.24	68.11
KRH61341	Soybean	endoplasmic reticulum, extracellular, vacuole	53.32	67.85
Solyc12g088670.1.1	Tomato	endoplasmic reticulum	67.02	67.17
CDY17193	Canola	endoplasmic reticulum	45.61	66.98
PGSC0003DMT400020654	Potato	cytosol	63.17	66.59
GSMUA_Achr8P03350_001	Banana	endoplasmic reticulum, extracellular, vacuole	47.11	66.07
HORVU2Hr1G113460.2	Barley	plasma membrane	68.31	65.24
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	64.24	63.56
GSMUA_Achr1P09800_001	Banana	endoplasmic reticulum	63.81	63.0
CDY27951	Canola	endoplasmic reticulum	57.82	58.82
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi	42.61	58.02
VIT_12s0028g02250.t01	Wine grape	cytosol	36.4	57.24
VIT_03s0038g04000.t01	Wine grape	vacuole	43.04	57.1
VIT_18s0122g00790.t01	Wine grape	nucleus	40.69	56.55
VIT_10s0003g01100.t01	Wine grape	extracellular	38.33	52.65
VIT_17s0000g09770.t01	Wine grape	endoplasmic reticulum	40.26	52.22
VIT_01s0137g00330.t01	Wine grape	endoplasmic reticulum	39.83	51.81
CDY02431	Canola	nucleus	49.68	51.67
VIT_12s0028g02270.t01	Wine grape	endoplasmic reticulum, extracellular	37.47	51.32
VIT_12s0028g02290.t01	Wine grape	endoplasmic reticulum, extracellular	37.26	51.03
VIT_12s0028g02300.t01	Wine grape	endoplasmic reticulum, extracellular	36.83	50.44
VIT_12s0028g02260.t01	Wine grape	endoplasmic reticulum, extracellular	34.69	50.31
VIT_18s0001g13270.t01	Wine grape	extracellular	43.04	46.1

Protein Annotations

EntrezGene:100241957	wikigene:100241957	Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	EMBL:AM448784
MEROPS:C01.029	ProteinID:CAN61026	ProteinID:CAN61026.1	ProteinID:CCB45808	ProteinID:CCB45808.1	UniProt:F6GZY7
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0005575	GO:GO:0005576
GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005773
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:Granulin	InterPro:Granulin_sf
InterPro:IPR037277	EntrezGene:LOC100241957	wikigene:LOC100241957	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246
PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF352
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277
SignalP:SignalP-noTM	TIGR:TC52132	TIGR:TC63060	TIGR:TC63253	TMHMM:TMhelix	UniParc:UPI00019852E6
ArrayExpress:VIT_18s0001g09990	EnsemblPlantsGene:VIT_18s0001g09990	EnsemblPlants:VIT_18s0001g09990.t01	unigene:Vvi.7467	RefSeq:XP_002284973	RefSeq:XP_002284973.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:8369187..8372858

Molecular Weight (calculated)

51403.1 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.467

Length

467 amino acids

Sequence
(BLAST)

001: MGLCRSSSSM AVFLFLLLGL ASALDMSIIG YDETHGDKSS WRTDEDVMAV YEAWLAKHGK SYNALGEKER RFQIFKDNLR FIDEHNAENR TYKVGLNRFA
101: DLTNEEYRSM YLGTRTAAKR RSSNKISDRY AFRVGDSLPE SVDWRKKGAV VEVKDQGSCG SCWAFSTIAA VEGINKIVTG GLISLSEQEL VDCDTSYNEG
201: CNGGLMDYAF EFIINNGGID SEEDYPYKAS DGRCDQYRKN AKVVTIDGYE DVPENDEKSL EKAVANQPVS VAIEAGGREF QLYQSGIFTG RCGTALDHGV
301: TAVGYGTENG VDYWIVKNSW GASWGEEGYI RMERDLATSA TGKCGIAMEA SYPIKKGQNP PNPGPSPPSP IKPPTVCDNY YACPESSTCC CIFEYAKYCF
401: QWGCCPLEAA TCCEDHDSCC PQEYPVCNVR AGTCMMSKDN PLGVKALKRT AAKPHWAYGG DGKRSSA

Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)

001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA

Arabidopsis Description

RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.