Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63586 | Canola | endoplasmic reticulum | 76.69 | 76.69 |
| CDY17044 | Canola | endoplasmic reticulum | 76.69 | 76.69 |
| CDY17093 | Canola | endoplasmic reticulum | 75.16 | 75.49 |
| CDY06760 | Canola | endoplasmic reticulum | 74.51 | 74.84 |
| CDY17193 | Canola | endoplasmic reticulum | 50.33 | 72.64 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 69.06 | 68.61 |
| CDX71540 | Canola | extracellular | 65.8 | 65.65 |
| CDY22370 | Canola | extracellular | 65.36 | 65.22 |
| CDY25228 | Canola | extracellular | 65.14 | 65.0 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 58.82 | 57.82 |
| KXG27269 | Sorghum | endoplasmic reticulum | 57.73 | 57.11 |
| Zm00001d002065_P006 | Maize | plasma membrane | 57.73 | 56.62 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 58.61 | 56.04 |
| KRH05634 | Soybean | endoplasmic reticulum | 56.86 | 54.83 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 55.99 | 54.8 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 55.99 | 54.8 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 54.9 | 54.66 |
| TraesCS2B01G540100.2 | Wheat | golgi | 54.9 | 54.43 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 54.9 | 54.43 |
| PGSC0003DMT400020654 | Potato | cytosol | 52.29 | 54.18 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 55.12 | 53.94 |
| KRH15406 | Soybean | nucleus | 57.95 | 53.63 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 54.03 | 52.77 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 55.99 | 52.56 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 53.59 | 52.01 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 53.38 | 51.91 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 52.29 | 51.5 |
| CDY46179 | Canola | endoplasmic reticulum | 49.24 | 50.22 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 39.43 | 49.32 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.15 | 49.22 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.15 | 49.22 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 49.02 | 47.57 |
| CDY02431 | Canola | nucleus | 46.19 | 47.22 |
| CDX75633 | Canola | vacuole | 38.13 | 46.79 |
| CDY22445 | Canola | vacuole | 37.91 | 46.52 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 33.55 | 46.25 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 34.42 | 46.06 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 37.47 | 45.99 |
| CDY50154 | Canola | endoplasmic reticulum | 43.57 | 45.45 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.57 | 45.45 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 28.76 | 44.9 |
| CDY44047 | Canola | vacuole | 37.04 | 44.27 |
| CDX99227 | Canola | endoplasmic reticulum | 48.8 | 44.18 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 23.53 | 43.55 |
| CDX96617 | Canola | endoplasmic reticulum | 29.85 | 41.9 |
| CDY33651 | Canola | endoplasmic reticulum | 29.63 | 41.72 |
| CDX75496 | Canola | endoplasmic reticulum | 32.24 | 41.57 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 33.33 | 41.35 |
| CDY01351 | Canola | endoplasmic reticulum | 31.37 | 41.03 |
| CDY31861 | Canola | endoplasmic reticulum | 31.37 | 40.79 |
| CDY25281 | Canola | extracellular | 32.9 | 40.7 |
| CDX83168 | Canola | endoplasmic reticulum | 31.81 | 40.44 |
| CDY25283 | Canola | vacuole | 32.46 | 39.95 |
| CDY48168 | Canola | endoplasmic reticulum | 31.15 | 39.83 |
| CDY58055 | Canola | golgi, nucleus, plastid | 27.89 | 39.75 |
| CDY34045 | Canola | endoplasmic reticulum | 31.15 | 39.61 |
| CDX94938 | Canola | extracellular, vacuole | 38.13 | 39.59 |
| CDX93470 | Canola | plasma membrane | 38.13 | 39.5 |
| CDX69132 | Canola | plastid | 32.46 | 39.21 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 32.24 | 39.05 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 28.54 | 38.19 |
| CDX87758 | Canola | endoplasmic reticulum | 28.54 | 37.86 |
| CDY50483 | Canola | endoplasmic reticulum | 28.54 | 37.86 |
| CDY39575 | Canola | endoplasmic reticulum | 29.85 | 37.23 |
| CDY31498 | Canola | cytosol | 21.35 | 32.78 |
Protein Annotations
| Gene3D:2.40.50.170 | Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078GRA4 | UniProt:A0A078GRA4 |
| EnsemblPlants:CDY27951 | ProteinID:CDY27951 | ProteinID:CDY27951.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00038870001 |
| InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | ScanProsite:PS00139 |
| PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_cys_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C |
| SMART:SM00277 | SMART:SM00645 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | UniParc:UPI0004EE08D9 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng05360DBnaCnng05360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRA4]
Coordinates
chrLK032212:+:485425..488167
Molecular Weight (calculated)
50928.3 Da
IEP (calculated)
7.708
GRAVY (calculated)
-0.480
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLISPVMAI LFLTMIGVET AMDMSIISHD DCHHTFSAGS RSDAEVSRLY EEWLGKHGKV QTGLGSEFSY RERSTSYRLG LTKFADLTND QYRSMYVGSR
101: LKRTITRTSL RYEACVGDAL PESVDWRKEG AVTEVKDQGS GGSCWGFSAI GAVEGVNKIV TGDLISLSKQ ELVDCDIPYN EGCNGGLMDY AFKFIINNGG
201: VDTEEDYPYK GVDGRCDQTR KNAKVVTIDS YEDVPANSEE SLKKALSHQP ISVAIEAGGR AFQLYDSFCP GAGAGGSRKK FRYIRWNLWN KSRPRSFGGR
301: IRNRERQRLL DCEKLMGSSW GESGYIRMER NIAASGGKCG IAVEPSYPIK NGQNPPNPGP SPPSPIKPPI QCDNYYTCPQ RYTCCCLFEY GKYCIAWGCC
401: PLEAATCCDD NDSCCPHDYP VCDLDHGTCL MSKNSLFSVK ALKRKPATPF WQQSRKNIA
101: LKRTITRTSL RYEACVGDAL PESVDWRKEG AVTEVKDQGS GGSCWGFSAI GAVEGVNKIV TGDLISLSKQ ELVDCDIPYN EGCNGGLMDY AFKFIINNGG
201: VDTEEDYPYK GVDGRCDQTR KNAKVVTIDS YEDVPANSEE SLKKALSHQP ISVAIEAGGR AFQLYDSFCP GAGAGGSRKK FRYIRWNLWN KSRPRSFGGR
301: IRNRERQRLL DCEKLMGSSW GESGYIRMER NIAASGGKCG IAVEPSYPIK NGQNPPNPGP SPPSPIKPPI QCDNYYTCPQ RYTCCCLFEY GKYCIAWGCC
401: PLEAATCCDD NDSCCPHDYP VCDLDHGTCL MSKNSLFSVK ALKRKPATPF WQQSRKNIA
001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM
Arabidopsis Description
XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.