Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 99.09 | 98.87 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 97.95 | 97.95 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 82.05 | 80.4 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 81.36 | 79.73 |
| CDY46179 | Canola | endoplasmic reticulum | 79.77 | 78.0 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 72.95 | 71.02 |
| CDX99227 | Canola | endoplasmic reticulum | 78.64 | 68.24 |
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.14 | 55.16 |
| CDY17093 | Canola | endoplasmic reticulum | 55.23 | 53.17 |
| CDY17044 | Canola | endoplasmic reticulum | 55.0 | 52.72 |
| CDX71540 | Canola | extracellular | 55.0 | 52.61 |
| CDY22370 | Canola | extracellular | 55.0 | 52.61 |
| CDY06760 | Canola | endoplasmic reticulum | 54.55 | 52.52 |
| CDY63586 | Canola | endoplasmic reticulum | 54.77 | 52.51 |
| CDY25228 | Canola | extracellular | 54.09 | 51.74 |
| Zm00001d001900_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 53.86 | 50.97 |
| CDX75633 | Canola | vacuole | 43.18 | 50.8 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 43.18 | 50.8 |
| CDY22445 | Canola | vacuole | 43.18 | 50.8 |
| CDY17193 | Canola | endoplasmic reticulum | 36.59 | 50.63 |
| Zm00001d026577_P001 | Maize | extracellular, golgi, plasma membrane | 53.86 | 50.43 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 33.64 | 50.34 |
| TraesCS2A01G545700.1 | Wheat | unclear | 53.86 | 50.21 |
| TraesCS2D01G546600.1 | Wheat | plasma membrane, vacuole | 54.09 | 50.11 |
| TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 29.32 | 50.0 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 52.95 | 49.68 |
| TraesCS2B01G576300.1 | Wheat | unclear | 52.95 | 49.68 |
| CDY44047 | Canola | vacuole | 43.18 | 49.48 |
| EES13064 | Sorghum | extracellular, plasma membrane, vacuole | 52.5 | 49.46 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 52.5 | 49.36 |
| CDY31861 | Canola | endoplasmic reticulum | 39.09 | 48.73 |
| CDY01351 | Canola | endoplasmic reticulum | 38.86 | 48.72 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 51.59 | 48.5 |
| TraesCS7B01G162200.1 | Wheat | endoplasmic reticulum | 50.68 | 48.37 |
| HORVU7Hr1G055310.1 | Barley | extracellular | 51.14 | 48.18 |
| Os04t0670200-02 | Rice | extracellular | 53.86 | 48.17 |
| TraesCS2A01G546700.1 | Wheat | endoplasmic reticulum | 51.14 | 48.08 |
| TraesCS2A01G546300.1 | Wheat | endoplasmic reticulum, vacuole | 51.14 | 47.97 |
| TraesCS5D01G149800.1 | Wheat | endoplasmic reticulum | 50.68 | 47.65 |
| EES11628 | Sorghum | extracellular | 50.91 | 47.56 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 50.91 | 47.26 |
| HORVU2Hr1G121150.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 51.59 | 46.71 |
| CDY58055 | Canola | golgi, nucleus, plastid | 34.09 | 46.58 |
| CDX96617 | Canola | endoplasmic reticulum | 34.55 | 46.48 |
| CDX75496 | Canola | endoplasmic reticulum | 37.27 | 46.07 |
| CDY33651 | Canola | endoplasmic reticulum | 34.09 | 46.01 |
| CDY48168 | Canola | endoplasmic reticulum | 37.27 | 45.68 |
| HORVU2Hr1G121440.2 | Barley | endoplasmic reticulum | 51.82 | 45.6 |
| Os04t0670500-01 | Rice | extracellular | 50.68 | 45.51 |
| CDY50483 | Canola | endoplasmic reticulum | 35.23 | 44.8 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 34.77 | 44.61 |
| CDX87758 | Canola | endoplasmic reticulum | 35.0 | 44.51 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 25.0 | 44.35 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 37.27 | 44.32 |
| CDX83168 | Canola | endoplasmic reticulum | 36.36 | 44.32 |
| CDY25281 | Canola | extracellular | 37.27 | 44.2 |
| CDY34045 | Canola | endoplasmic reticulum | 36.14 | 44.04 |
| CDX93470 | Canola | plasma membrane | 44.32 | 44.02 |
| CDX94938 | Canola | extracellular, vacuole | 44.09 | 43.89 |
| CDY27951 | Canola | endoplasmic reticulum | 45.45 | 43.57 |
| CDY25283 | Canola | vacuole | 36.82 | 43.43 |
| CDX69132 | Canola | plastid | 37.05 | 42.89 |
| CDY31498 | Canola | cytosol | 28.64 | 42.14 |
| CDY39575 | Canola | endoplasmic reticulum | 35.0 | 41.85 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 35.91 | 41.69 |
| CDY02431 | Canola | nucleus | 41.36 | 40.53 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078ILD3 | UniProt:A0A078ILD3 | EnsemblPlants:CDY50154 |
| ProteinID:CDY50154 | ProteinID:CDY50154.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00096068001 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI0004EE0441 | SEG:seg | : | : | : |
Description
BnaA01g26140DBnaA01g26140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILD3]
Coordinates
chrLK032885:-:59635..61705
Molecular Weight (calculated)
47763.1 Da
IEP (calculated)
5.536
GRAVY (calculated)
-0.312
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTRITFTFP SLVILSVLLA SSYLGGVTAK VVDQNLAEQK LFERWLVENH KNYNGLGEKD KRFQIFTDNL KFVQEHNSVP NQSYELGLTR FADLTNEEFR
101: AMYLRKKMER RTSRAPVKAE RYLHKAGDSL PDEVDWRAKG AVAPVRDQGD CGSSWAFSTT GAIEGINKIK TGELITLSVQ ELVDCDRGYN DGCNGGLMDA
201: AFLFIIANGG LDTEADYPYT ATDNNTCNSD KKNTRVVTID GYVAVPGNDE KSLKKAVAHQ PVSVAIEAGG REFQLYKSGV FTGACGTDLD HAALAVGYGT
301: SEGQDYWIIR DSLGSNWGES GYIRLQRNVN DSAGKCGVAM LASYPTQSVV CDKSYTCPDK STCCCVSESK GKCDSWGCCP FESATCCENG SSCCPQLYPV
401: CDLEDGTCRV KANSPLSVKA LTRGPATAIT KATNVLVSSA
101: AMYLRKKMER RTSRAPVKAE RYLHKAGDSL PDEVDWRAKG AVAPVRDQGD CGSSWAFSTT GAIEGINKIK TGELITLSVQ ELVDCDRGYN DGCNGGLMDA
201: AFLFIIANGG LDTEADYPYT ATDNNTCNSD KKNTRVVTID GYVAVPGNDE KSLKKAVAHQ PVSVAIEAGG REFQLYKSGV FTGACGTDLD HAALAVGYGT
301: SEGQDYWIIR DSLGSNWGES GYIRLQRNVN DSAGKCGVAM LASYPTQSVV CDKSYTCPDK STCCCVSESK GKCDSWGCCP FESATCCENG SSCCPQLYPV
401: CDLEDGTCRV KANSPLSVKA LTRGPATAIT KATNVLVSSA
001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
Arabidopsis Description
RD21CProbable cysteine protease RD21C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT78]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.