Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 95.88 | 93.25 |
| HORVU7Hr1G055310.1 | Barley | extracellular | 93.71 | 92.51 |
| TraesCS5D01G149800.1 | Wheat | endoplasmic reticulum | 93.28 | 91.88 |
| TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 47.72 | 85.27 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 72.45 | 71.22 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 71.8 | 70.73 |
| Os04t0670500-01 | Rice | extracellular | 73.54 | 69.18 |
| EES11628 | Sorghum | extracellular | 69.41 | 67.94 |
| TraesCS2B01G576300.1 | Wheat | unclear | 67.25 | 66.1 |
| VIT_07s0031g00050.t01 | Wine grape | nucleus | 42.08 | 58.79 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 54.23 | 58.69 |
| TraesCS2B01G540100.2 | Wheat | golgi | 56.4 | 56.16 |
| Solyc01g107760.2.1 | Tomato | extracellular | 56.18 | 55.11 |
| PGSC0003DMT400066566 | Potato | endoplasmic reticulum | 55.97 | 54.89 |
| KRH57968 | Soybean | endoplasmic reticulum | 42.52 | 53.55 |
| KRH07581 | Soybean | endoplasmic reticulum | 42.3 | 53.28 |
| Solyc02g093040.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 41.87 | 53.17 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 51.63 | 53.01 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 51.63 | 53.01 |
| KRH04538 | Soybean | extracellular | 41.87 | 52.73 |
| PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 41.21 | 52.63 |
| PGSC0003DMT400053921 | Potato | extracellular | 41.43 | 52.47 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 50.98 | 52.22 |
| CDY46179 | Canola | endoplasmic reticulum | 50.98 | 52.22 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 41.0 | 52.21 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 50.76 | 51.77 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 49.89 | 51.11 |
| CDY22445 | Canola | vacuole | 41.43 | 51.07 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 41.43 | 51.07 |
| AT4G36880.1 | Thale cress | vacuole | 41.43 | 50.8 |
| CDY50154 | Canola | endoplasmic reticulum | 48.37 | 50.68 |
| TraesCS6B01G379900.1 | Wheat | cytosol, mitochondrion, nucleus | 16.27 | 50.68 |
| TraesCS6B01G378700.1 | Wheat | cytosol, mitochondrion, nucleus | 16.27 | 50.68 |
| Bra011746.1-P | Field mustard | vacuole | 41.0 | 50.53 |
| CDX75633 | Canola | vacuole | 41.0 | 50.53 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.16 | 50.45 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 48.16 | 50.34 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 40.56 | 50.0 |
| Solyc03g044230.1.1 | Tomato | extracellular | 41.0 | 49.87 |
| TraesCS1B01G033200.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 37.96 | 49.72 |
| CDY44047 | Canola | vacuole | 41.21 | 49.48 |
| TraesCS5B01G138300.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 37.96 | 49.16 |
| TraesCS3B01G380400.1 | Wheat | golgi | 37.09 | 46.98 |
| CDX99227 | Canola | endoplasmic reticulum | 50.76 | 46.15 |
| TraesCS4B01G039700.1 | Wheat | extracellular | 34.06 | 46.04 |
| TraesCS4B01G039800.1 | Wheat | extracellular | 34.06 | 46.04 |
| TraesCS4B01G039600.1 | Wheat | extracellular | 33.84 | 45.75 |
| TraesCS4B01G039900.1 | Wheat | endoplasmic reticulum, extracellular | 33.84 | 45.75 |
| TraesCS3B01G378600.1 | Wheat | endoplasmic reticulum | 36.44 | 45.53 |
| TraesCS6B01G182100.1 | Wheat | endoplasmic reticulum, extracellular | 33.62 | 45.32 |
| TraesCS4B01G039500.1 | Wheat | extracellular | 33.41 | 45.16 |
| TraesCS1B01G236800.1 | Wheat | extracellular | 33.19 | 45.13 |
| TraesCS6B01G379000.1 | Wheat | extracellular | 33.19 | 45.13 |
| TraesCS6B01G378900.1 | Wheat | extracellular | 33.19 | 45.13 |
| TraesCS6B01G378400.1 | Wheat | extracellular | 33.19 | 45.13 |
| TraesCS2B01G067700.1 | Wheat | extracellular | 33.19 | 45.0 |
| TraesCS2B01G067800.1 | Wheat | extracellular | 33.19 | 45.0 |
| TraesCS2B01G067900.1 | Wheat | extracellular | 33.19 | 45.0 |
| TraesCS4B01G040000.1 | Wheat | endoplasmic reticulum, extracellular | 33.19 | 44.87 |
| TraesCS6B01G379300.1 | Wheat | extracellular | 32.97 | 44.84 |
| TraesCS6B01G182200.1 | Wheat | extracellular | 33.19 | 44.74 |
| TraesCS6B01G380200.1 | Wheat | extracellular | 32.54 | 44.25 |
| TraesCS5B01G072400.1 | Wheat | extracellular | 32.32 | 44.21 |
| TraesCS6B01G308300.1 | Wheat | extracellular, vacuole | 34.27 | 44.01 |
| TraesCS5B01G523100.1 | Wheat | extracellular | 32.32 | 43.82 |
| TraesCS3B01G447500.1 | Wheat | extracellular, vacuole | 35.14 | 43.67 |
| TraesCS6B01G380000.1 | Wheat | extracellular | 32.1 | 43.66 |
| TraesCS6B01G379200.1 | Wheat | extracellular | 32.1 | 43.66 |
| TraesCS7B01G387600.1 | Wheat | extracellular | 32.1 | 43.53 |
| TraesCS7B01G292000.1 | Wheat | cytosol, extracellular, nucleus | 28.85 | 43.32 |
| TraesCS4B01G076200.1 | Wheat | endoplasmic reticulum | 37.53 | 43.25 |
| TraesCS2B01G068000.1 | Wheat | extracellular, golgi, plastid | 27.11 | 43.1 |
| TraesCS3B01G447400.1 | Wheat | endoplasmic reticulum | 34.49 | 42.51 |
| TraesCS1B01G338500.1 | Wheat | endoplasmic reticulum, unclear | 41.43 | 41.34 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF343 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_cys_AS |
| InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 |
| SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7B01G162200 |
| EnsemblPlants:TraesCS7B01G162200.1 | TIGR:cd02248 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7B:+:222553048..222554617
Molecular Weight (calculated)
49662.2 Da
IEP (calculated)
6.185
GRAVY (calculated)
-0.348
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGSKAAAA VAVVLAFLLF VVASSAAAAA PDMSIVSYNS AHAVCGLERT EAEVRAMYDH WLARHGRSYN ALGEYDRRFQ AFWDNLRLVD AHNADADAHG
101: FRLGMNRFAD LTNDEFRARY LHDGAEALPE SVDWREKGAV APVKNQGQCG SCWAFSAVGA VEGINKIVTG DLVTLSEQEL VECARNGQNS GCNGGMMEDA
201: FDFIARNGGI DTEEDYPYTA KDGRCDLAKR SRTVVSIDGF ESVPENDELS LKKAVAHQPV SVGIEAGGPE FQLYESGVFT GRCGTELDHG VVAVGYGTDN
301: GRDYWSVRNS WGPDWGEGGY IRMERNVTAR TGKCGIAMMA SYPVKNGPNP SPKPPNPPKP KPVACDRHSK CPAGSTCCCT HGVRKTCFVW GCCPAKGAIC
401: CKDGPTCCPS DYPVCNAENR TCSKSKNSPY TVEALIRTPA RRSRTTTLTQ LADSVFSELD V
101: FRLGMNRFAD LTNDEFRARY LHDGAEALPE SVDWREKGAV APVKNQGQCG SCWAFSAVGA VEGINKIVTG DLVTLSEQEL VECARNGQNS GCNGGMMEDA
201: FDFIARNGGI DTEEDYPYTA KDGRCDLAKR SRTVVSIDGF ESVPENDELS LKKAVAHQPV SVGIEAGGPE FQLYESGVFT GRCGTELDHG VVAVGYGTDN
301: GRDYWSVRNS WGPDWGEGGY IRMERNVTAR TGKCGIAMMA SYPVKNGPNP SPKPPNPPKP KPVACDRHSK CPAGSTCCCT HGVRKTCFVW GCCPAKGAIC
401: CKDGPTCCPS DYPVCNAENR TCSKSKNSPY TVEALIRTPA RRSRTTTLTQ LADSVFSELD V
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.