Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G540100.2 | Wheat | golgi | 99.78 | 99.78 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 98.92 | 99.35 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 96.33 | 91.21 |
| KXG27269 | Sorghum | endoplasmic reticulum | 84.45 | 84.27 |
| Zm00001d002065_P006 | Maize | plasma membrane | 82.07 | 81.2 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 82.07 | 79.17 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 72.14 | 71.22 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 70.19 | 69.3 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 68.68 | 67.8 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 68.25 | 67.67 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 68.68 | 67.66 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 48.38 | 67.27 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 66.95 | 67.1 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 68.03 | 66.6 |
| CDY17093 | Canola | endoplasmic reticulum | 65.23 | 66.08 |
| Bra040749.1-P | Field mustard | endoplasmic reticulum | 65.23 | 66.08 |
| CDY63586 | Canola | endoplasmic reticulum | 65.44 | 66.01 |
| CDY06760 | Canola | endoplasmic reticulum | 65.01 | 65.86 |
| CDY17044 | Canola | endoplasmic reticulum | 65.23 | 65.8 |
| Bra014057.1-P | Field mustard | endoplasmic reticulum | 65.23 | 65.8 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 65.01 | 65.01 |
| CDX71540 | Canola | extracellular | 64.15 | 64.57 |
| Bra033657.1-P | Field mustard | extracellular | 63.93 | 64.35 |
| CDY22370 | Canola | extracellular | 63.93 | 64.35 |
| CDY25228 | Canola | extracellular | 63.07 | 63.48 |
| KRH05634 | Soybean | endoplasmic reticulum | 65.01 | 63.24 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 62.85 | 62.45 |
| CDY17193 | Canola | endoplasmic reticulum | 42.55 | 61.95 |
| PGSC0003DMT400020654 | Potato | cytosol | 58.96 | 61.63 |
| KRH15406 | Soybean | nucleus | 65.87 | 61.49 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 62.2 | 60.89 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 44.49 | 60.06 |
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 47.73 | 60.05 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 61.12 | 59.96 |
| TraesCS2D01G546600.1 | Wheat | plasma membrane, vacuole | 60.48 | 58.95 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 45.36 | 57.22 |
| TraesCS5D01G149800.1 | Wheat | endoplasmic reticulum | 56.8 | 56.2 |
| TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 31.1 | 55.81 |
| CDY27951 | Canola | endoplasmic reticulum | 54.43 | 54.9 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 55.29 | 54.7 |
| TraesCS6D01G144100.1 | Wheat | cytosol | 34.13 | 52.32 |
| TraesCS5D01G152400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 39.09 | 50.84 |
| TraesCS1D01G026500.1 | Wheat | endoplasmic reticulum | 38.01 | 50.14 |
| TraesCS4D01G074800.1 | Wheat | endoplasmic reticulum | 40.17 | 50.0 |
| TraesCS7D01G471400.1 | Wheat | extracellular | 36.29 | 49.41 |
| TraesCS6D01G328000.1 | Wheat | extracellular | 36.07 | 49.26 |
| TraesCS7D01G220000.1 | Wheat | extracellular | 36.07 | 49.12 |
| TraesCS6D01G328300.1 | Wheat | extracellular | 35.85 | 48.97 |
| TraesCS1D01G225100.1 | Wheat | extracellular | 35.85 | 48.97 |
| TraesCS6D01G328100.1 | Wheat | extracellular | 35.64 | 48.67 |
| TraesCS6D01G329600.1 | Wheat | extracellular | 35.42 | 48.38 |
| TraesCS6D01G329500.1 | Wheat | extracellular | 35.42 | 48.38 |
| TraesCS6D01G328600.1 | Wheat | extracellular | 35.21 | 48.08 |
| TraesCS6D01G329900.1 | Wheat | extracellular | 35.21 | 48.08 |
| TraesCS6D01G328500.1 | Wheat | extracellular | 35.21 | 48.08 |
| TraesCS6D01G144000.1 | Wheat | endoplasmic reticulum, extracellular | 35.42 | 47.95 |
| TraesCS3D01G340500.1 | Wheat | endoplasmic reticulum | 37.58 | 47.8 |
| TraesCS4D01G037200.1 | Wheat | extracellular | 35.21 | 47.8 |
| TraesCS4D01G036700.1 | Wheat | extracellular | 35.21 | 47.8 |
| TraesCS4D01G037300.1 | Wheat | extracellular | 34.99 | 47.51 |
| TraesCS4D01G037000.1 | Wheat | extracellular | 34.99 | 47.51 |
| CDY02431 | Canola | nucleus | 46.0 | 47.44 |
| TraesCS6D01G329400.1 | Wheat | extracellular | 33.48 | 47.4 |
| TraesCS4D01G037500.1 | Wheat | extracellular | 34.34 | 46.63 |
| TraesCS4D01G036900.1 | Wheat | extracellular | 34.34 | 46.63 |
| TraesCS4D01G037100.1 | Wheat | extracellular | 34.34 | 46.63 |
| TraesCS3D01G407600.1 | Wheat | endoplasmic reticulum | 37.8 | 46.42 |
| TraesCS3D01G407700.1 | Wheat | endoplasmic reticulum | 37.37 | 46.13 |
| TraesCS4D01G037400.1 | Wheat | extracellular | 32.4 | 45.73 |
| TraesCS5D01G076500.1 | Wheat | endoplasmic reticulum, extracellular | 32.83 | 45.24 |
| TraesCS5D01G401300.1 | Wheat | extracellular | 33.69 | 45.22 |
| TraesCS1D01G327000.1 | Wheat | extracellular | 44.28 | 45.15 |
| TraesCS4D01G036600.1 | Wheat | extracellular | 25.49 | 44.36 |
| TraesCS3D01G342100.2 | Wheat | endoplasmic reticulum | 36.72 | 43.04 |
| TraesCS6D01G259900.1 | Wheat | plastid | 34.99 | 42.86 |
| TraesCS6D01G329300.1 | Wheat | extracellular | 27.21 | 39.62 |
| TraesCS4D01G036800.1 | Wheat | extracellular | 10.8 | 33.78 |
| TraesCS2D01G053700.1 | Wheat | extracellular | 7.13 | 27.05 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2D01G513600 | EnsemblPlants:TraesCS2D01G513600.1 | TIGR:cd02248 | SEG:seg | : |
Description
No Description!
Coordinates
chr2D:+:605709938..605713349
Molecular Weight (calculated)
50579.0 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.481
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRSMALLAA AAALLLLVSL AAAADMSIVS YGERSEEEVR RMYAEWMSEH RRTYNAIGEE ERRFEVFRDN LRYIDQHNAA ADAGLHSFRL GLNRFADLTN
101: EEYRSTYLGA RTKPDRERKL SARYQADDNE ELPETVDWRK KGAVAAIKDQ GGCGSCWAFS AIAAVEGINQ IVTGDMIPLS EQELVDCDTS YNEGCNGGLM
201: DYAFEFIINN GGIDSEEDYP YKERDNRCDA NKKNAKVVTI DGYEDVPVNS EKSLQKAVAN QPISVAIEAG GRAFQLYKSG IFTGTCGTAL DHGVAAVGYG
301: TENGKDYWLV RNSWGTVWGE DGYIRMERNI KASSGKCGIA VEPSYPTKTG ENPPNPGPTP PSPAPPSSVC DSYNECPAST TCCCIYEYGK ECFAWGCCPL
401: EGATCCDDHY SCCPHNYPIC NTQQGTCLAA KDSPLSVKAQ RRTLAKPIGA FSGIATDGKK SSA
101: EEYRSTYLGA RTKPDRERKL SARYQADDNE ELPETVDWRK KGAVAAIKDQ GGCGSCWAFS AIAAVEGINQ IVTGDMIPLS EQELVDCDTS YNEGCNGGLM
201: DYAFEFIINN GGIDSEEDYP YKERDNRCDA NKKNAKVVTI DGYEDVPVNS EKSLQKAVAN QPISVAIEAG GRAFQLYKSG IFTGTCGTAL DHGVAAVGYG
301: TENGKDYWLV RNSWGTVWGE DGYIRMERNI KASSGKCGIA VEPSYPTKTG ENPPNPGPTP PSPAPPSSVC DSYNECPAST TCCCIYEYGK ECFAWGCCPL
401: EGATCCDDHY SCCPHNYPIC NTQQGTCLAA KDSPLSVKAQ RRTLAKPIGA FSGIATDGKK SSA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.