Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
19786127
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G540100.2 | Wheat | golgi | 99.57 | 99.14 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 99.35 | 98.92 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 95.88 | 90.39 |
| KXG27269 | Sorghum | endoplasmic reticulum | 84.16 | 83.62 |
| Zm00001d002065_P006 | Maize | plasma membrane | 81.78 | 80.56 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 82.0 | 78.75 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 72.23 | 71.0 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 70.28 | 69.08 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 68.76 | 67.59 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 48.59 | 67.27 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 68.11 | 67.24 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 68.55 | 67.23 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 67.03 | 66.88 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 68.11 | 66.38 |
| CDY17093 | Canola | endoplasmic reticulum | 65.29 | 65.86 |
| Bra040749.1-P | Field mustard | endoplasmic reticulum | 65.29 | 65.86 |
| CDY63586 | Canola | endoplasmic reticulum | 65.51 | 65.8 |
| CDY06760 | Canola | endoplasmic reticulum | 65.08 | 65.65 |
| CDY17044 | Canola | endoplasmic reticulum | 65.29 | 65.58 |
| Bra014057.1-P | Field mustard | endoplasmic reticulum | 65.29 | 65.58 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 65.08 | 64.79 |
| CDX71540 | Canola | extracellular | 64.43 | 64.57 |
| Bra033657.1-P | Field mustard | extracellular | 64.21 | 64.35 |
| CDY22370 | Canola | extracellular | 64.21 | 64.35 |
| CDY25228 | Canola | extracellular | 63.12 | 63.26 |
| KRH05634 | Soybean | endoplasmic reticulum | 65.08 | 63.03 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.12 | 62.45 |
| CDY17193 | Canola | endoplasmic reticulum | 42.52 | 61.64 |
| PGSC0003DMT400020654 | Potato | cytosol | 59.22 | 61.63 |
| KRH15406 | Soybean | nucleus | 65.94 | 61.29 |
| TraesCS2A01G054600.1 | Wheat | cytosol, nucleus, plastid | 12.58 | 61.05 |
| TraesCS2A01G054500.1 | Wheat | cytosol, nucleus, plastid | 12.58 | 61.05 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 62.26 | 60.68 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 44.69 | 60.06 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 61.39 | 59.96 |
| TraesCS2A01G545700.1 | Wheat | unclear | 60.95 | 59.53 |
| TraesCS4A01G273900.1 | Wheat | cytosol, nucleus, plastid | 12.15 | 58.95 |
| TraesCS2A01G054800.1 | Wheat | cytosol, mitochondrion, nucleus | 18.87 | 58.78 |
| TraesCS6A01G346400.1 | Wheat | cytosol | 11.93 | 57.89 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 45.55 | 57.22 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 57.7 | 56.12 |
| TraesCS2A01G546700.1 | Wheat | endoplasmic reticulum | 55.75 | 54.91 |
| CDY27951 | Canola | endoplasmic reticulum | 54.66 | 54.9 |
| TraesCS2A01G546300.1 | Wheat | endoplasmic reticulum, vacuole | 55.53 | 54.58 |
| TraesCS6A01G345600.1 | Wheat | cytosol, mitochondrion, nucleus | 17.14 | 53.38 |
| TraesCS4A01G238600.1 | Wheat | nucleus | 39.7 | 50.27 |
| TraesCS1A01G027300.1 | Wheat | endoplasmic reticulum | 37.96 | 49.86 |
| TraesCS1A01G223500.1 | Wheat | extracellular | 36.01 | 48.97 |
| TraesCS4A01G274100.1 | Wheat | extracellular | 35.57 | 48.81 |
| TraesCS6A01G345900.1 | Wheat | extracellular | 35.79 | 48.67 |
| TraesCS6A01G154300.1 | Wheat | extracellular | 36.01 | 48.54 |
| TraesCS4A01G274000.1 | Wheat | extracellular | 35.79 | 48.39 |
| TraesCS6A01G346800.1 | Wheat | extracellular | 35.36 | 48.08 |
| TraesCS5A01G138700.1 | Wheat | plastid | 39.26 | 48.01 |
| TraesCS3A01G346900.1 | Wheat | endoplasmic reticulum | 37.53 | 47.53 |
| TraesCS4A01G273800.1 | Wheat | extracellular | 35.14 | 47.51 |
| CDY02431 | Canola | nucleus | 45.99 | 47.22 |
| TraesCS6A01G346600.1 | Wheat | extracellular | 34.71 | 47.2 |
| TraesCS3A01G348500.1 | Wheat | endoplasmic reticulum | 37.09 | 46.98 |
| TraesCS3A01G413000.1 | Wheat | endoplasmic reticulum | 37.53 | 46.88 |
| TraesCS6A01G279500.1 | Wheat | endoplasmic reticulum, extracellular | 36.23 | 46.39 |
| TraesCS6A01G346500.1 | Wheat | extracellular | 28.2 | 46.26 |
| TraesCS3A01G412900.1 | Wheat | endoplasmic reticulum | 37.53 | 45.89 |
| TraesCS3A01G413200.1 | Wheat | endoplasmic reticulum | 37.09 | 45.6 |
| TraesCS5A01G391500.1 | Wheat | endoplasmic reticulum, extracellular | 33.84 | 45.09 |
| TraesCS1A01G325400.1 | Wheat | extracellular | 43.6 | 44.37 |
| TraesCS2A01G056000.1 | Wheat | endoplasmic reticulum, extracellular | 32.1 | 44.18 |
| TraesCS4A01G273700.1 | Wheat | extracellular | 27.77 | 42.24 |
| TraesCS2A01G054700.1 | Wheat | cytosol, mitochondrion, nucleus | 9.76 | 42.06 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS |
| InterPro:Pept_cys_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 |
| SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2A01G512100 |
| EnsemblPlants:TraesCS2A01G512100.1 | TIGR:cd02248 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:737046055..737049316
Molecular Weight (calculated)
50393.7 Da
IEP (calculated)
4.750
GRAVY (calculated)
-0.485
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSMALLAA ALLLLVSLAA AADMSIVSYG ERSEEEVRRM YAEWMSEHRR TYNAIGEEER RFEVFRDNLR YIDQHNAAAD AGLHSFRLGL NRFADLTNEE
101: YRSTYLGART KPDRERKLSA RYQADDNEEL PETVDWRKKG AVAAIKDQGG CGSCWAFSAI AAVEGINQIV TGDMIPLSEQ ELVDCDTSYN EGCNGGLMDY
201: AFEFIINNGG IDSEEDYPYK ERDNRCDANK KNAKVVTIDG YEDVPVNSEK SLQKAVANQP ISVAIEAGGR AFQLYKSGIF TGTCGTAPDH GVAAVGYGTE
301: NGKDYWLVRN SWGTVWGEDG YIRMERNIKA SSGKCGIAVE PSYPTKTGEN PPNPGPTPPS PAPPSSVCDS YNECPASTTC CCIYEYGKEC FAWGCCPLEG
401: ATCCDDHYSC CPHNYPICNT QQGTCLAAKD SPLSVKAQRR TLAKPIGAFS VIATDGKKSS A
101: YRSTYLGART KPDRERKLSA RYQADDNEEL PETVDWRKKG AVAAIKDQGG CGSCWAFSAI AAVEGINQIV TGDMIPLSEQ ELVDCDTSYN EGCNGGLMDY
201: AFEFIINNGG IDSEEDYPYK ERDNRCDANK KNAKVVTIDG YEDVPVNSEK SLQKAVANQP ISVAIEAGGR AFQLYKSGIF TGTCGTAPDH GVAAVGYGTE
301: NGKDYWLVRN SWGTVWGEDG YIRMERNIKA SSGKCGIAVE PSYPTKTGEN PPNPGPTPPS PAPPSSVCDS YNECPASTTC CCIYEYGKEC FAWGCCPLEG
401: ATCCDDHYSC CPHNYPICNT QQGTCLAAKD SPLSVKAQRR TLAKPIGAFS VIATDGKKSS A
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.