Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 75.0 | 95.38 |
| TraesCS2A01G546300.1 | Wheat | endoplasmic reticulum, vacuole | 95.51 | 95.31 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 94.44 | 94.44 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 92.95 | 92.95 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 92.31 | 92.11 |
| HORVU2Hr1G121150.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 89.74 | 86.42 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 72.22 | 71.31 |
| EES11628 | Sorghum | extracellular | 69.02 | 68.58 |
| Os04t0670500-01 | Rice | extracellular | 70.73 | 67.55 |
| TraesCS2A01G545700.1 | Wheat | unclear | 64.1 | 63.56 |
| VIT_07s0031g00050.t01 | Wine grape | nucleus | 42.73 | 60.61 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 53.85 | 59.15 |
| TraesCS2A01G054800.1 | Wheat | cytosol, mitochondrion, nucleus | 17.73 | 56.08 |
| TraesCS2A01G054600.1 | Wheat | cytosol, nucleus, plastid | 11.32 | 55.79 |
| TraesCS4A01G273900.1 | Wheat | cytosol, nucleus, plastid | 11.32 | 55.79 |
| TraesCS2A01G054500.1 | Wheat | cytosol, nucleus, plastid | 11.32 | 55.79 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 54.91 | 55.75 |
| KRH57968 | Soybean | endoplasmic reticulum | 42.95 | 54.92 |
| KRH07581 | Soybean | endoplasmic reticulum | 42.31 | 54.1 |
| TraesCS6A01G346400.1 | Wheat | cytosol | 10.9 | 53.68 |
| KRH04538 | Soybean | extracellular | 41.88 | 53.55 |
| Solyc02g093040.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 41.24 | 53.17 |
| PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 40.81 | 52.91 |
| Solyc01g107760.2.1 | Tomato | extracellular | 52.99 | 52.77 |
| PGSC0003DMT400053921 | Potato | extracellular | 40.81 | 52.47 |
| CDY22445 | Canola | vacuole | 41.88 | 52.41 |
| PGSC0003DMT400066566 | Potato | endoplasmic reticulum | 52.56 | 52.34 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.21 | 52.34 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 50.43 | 52.21 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 41.67 | 52.14 |
| AT4G36880.1 | Thale cress | vacuole | 41.67 | 51.86 |
| CDY46179 | Canola | endoplasmic reticulum | 49.79 | 51.78 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 49.79 | 51.78 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.57 | 51.67 |
| CDX75633 | Canola | vacuole | 41.03 | 51.34 |
| CDY50154 | Canola | endoplasmic reticulum | 48.08 | 51.14 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 39.32 | 50.83 |
| Bra011746.1-P | Field mustard | vacuole | 40.6 | 50.8 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 40.6 | 50.8 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 47.86 | 50.79 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 47.65 | 50.68 |
| TraesCS6A01G345600.1 | Wheat | cytosol, mitochondrion, nucleus | 16.03 | 50.68 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 48.72 | 50.67 |
| CDY44047 | Canola | vacuole | 41.45 | 50.52 |
| TraesCS1A01G027300.1 | Wheat | endoplasmic reticulum | 37.18 | 49.57 |
| Solyc03g044230.1.1 | Tomato | extracellular | 39.96 | 49.34 |
| TraesCS6A01G154300.1 | Wheat | extracellular | 35.9 | 49.12 |
| TraesCS4A01G274100.1 | Wheat | extracellular | 34.62 | 48.21 |
| TraesCS4A01G274000.1 | Wheat | extracellular | 35.04 | 48.09 |
| TraesCS2A01G056000.1 | Wheat | endoplasmic reticulum, extracellular | 34.4 | 48.06 |
| TraesCS4A01G238600.1 | Wheat | nucleus | 37.18 | 47.8 |
| TraesCS6A01G346800.1 | Wheat | extracellular | 34.62 | 47.79 |
| TraesCS4A01G273800.1 | Wheat | extracellular | 34.62 | 47.51 |
| TraesCS1A01G223500.1 | Wheat | extracellular | 34.4 | 47.49 |
| TraesCS5A01G391500.1 | Wheat | endoplasmic reticulum, extracellular | 35.04 | 47.4 |
| TraesCS5A01G138700.1 | Wheat | plastid | 38.03 | 47.21 |
| TraesCS3A01G346900.1 | Wheat | endoplasmic reticulum | 36.54 | 46.98 |
| TraesCS6A01G346600.1 | Wheat | extracellular | 33.97 | 46.9 |
| TraesCS3A01G348500.1 | Wheat | endoplasmic reticulum | 36.32 | 46.7 |
| TraesCS6A01G346500.1 | Wheat | extracellular | 27.78 | 46.26 |
| TraesCS6A01G345900.1 | Wheat | extracellular | 33.33 | 46.02 |
| TraesCS6A01G279500.1 | Wheat | endoplasmic reticulum, extracellular | 35.26 | 45.83 |
| TraesCS3A01G413000.1 | Wheat | endoplasmic reticulum | 35.9 | 45.53 |
| CDX99227 | Canola | endoplasmic reticulum | 49.15 | 45.36 |
| TraesCS3A01G412900.1 | Wheat | endoplasmic reticulum | 36.54 | 45.36 |
| TraesCS3A01G413200.1 | Wheat | endoplasmic reticulum | 36.11 | 45.07 |
| TraesCS4A01G273700.1 | Wheat | extracellular | 27.78 | 42.9 |
| TraesCS1A01G325400.1 | Wheat | extracellular | 41.03 | 42.38 |
| TraesCS2A01G054700.1 | Wheat | cytosol, mitochondrion, nucleus | 9.62 | 42.06 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF343 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2A01G546700 | EnsemblPlants:TraesCS2A01G546700.1 | TIGR:cd02248 | SEG:seg | : |
Description
No Description!
Coordinates
chr2A:-:755339510..755340916
Molecular Weight (calculated)
49820.6 Da
IEP (calculated)
7.450
GRAVY (calculated)
-0.290
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRGAAAAA GALVLLVILA ASSPAAAAHV DEAAEHGARG LTRRTEADVR AMFDAWLARH GRSYNALAEY VRRLRAFRDN LDFVEAHNAR AAQRGGFRLG
101: MNRFADLTNA EFRAAYLGAG AAGRARNAVG DRYRYHAEDV LPESVDWREK GAVAPVKNQG HCGSCWAFST VAAVEGVNKM VTGKLVKLSE QELVDCSRNG
201: QNSGCNGGIM DDAFDFIVRN GGIDTEEDYP YTAKEGKCDL AKKARKVVSI DGFEDVPADD EASLMKAVAH QPVSVAIEAG GREFQLYESG VFTGRCGTEL
301: DHAVLAVGYG TEADGGKGFW LVRNSWGPGW GEGGYIRMER NVTASSGKCG IAMFASYPVK NGPNPKPAPP APEEKCDRYS SCPAGSTCCC TYGVRNVCLA
401: WGCCPAEGAT CCRDRGTCCP SDYPVCNAGS RTCAKSKGSP YTVDALPRTP AKRQRTAVSD LVDSIFSI
101: MNRFADLTNA EFRAAYLGAG AAGRARNAVG DRYRYHAEDV LPESVDWREK GAVAPVKNQG HCGSCWAFST VAAVEGVNKM VTGKLVKLSE QELVDCSRNG
201: QNSGCNGGIM DDAFDFIVRN GGIDTEEDYP YTAKEGKCDL AKKARKVVSI DGFEDVPADD EASLMKAVAH QPVSVAIEAG GREFQLYESG VFTGRCGTEL
301: DHAVLAVGYG TEADGGKGFW LVRNSWGPGW GEGGYIRMER NVTASSGKCG IAMFASYPVK NGPNPKPAPP APEEKCDRYS SCPAGSTCCC TYGVRNVCLA
401: WGCCPAEGAT CCRDRGTCCP SDYPVCNAGS RTCAKSKGSP YTVDALPRTP AKRQRTAVSD LVDSIFSI
001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM
Arabidopsis Description
XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.