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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 6
  • golgi 5
  • endoplasmic reticulum 7
  • plasma membrane 4
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46179 Canola endoplasmic reticulum 83.41 83.78
Bra022418.1-P Field mustard endoplasmic reticulum 83.19 83.56
CDX95457 Canola endoplasmic reticulum, extracellular, vacuole 80.75 81.29
CDY50157 Canola endoplasmic reticulum, extracellular, vacuole 80.75 81.29
Bra038206.1-P Field mustard extracellular, plasma membrane, vacuole 78.54 78.89
CDX99227 Canola endoplasmic reticulum 82.08 73.18
CDY50154 Canola endoplasmic reticulum 71.02 72.95
AT3G19400.1 Thale cress endoplasmic reticulum, vacuole 58.19 72.65
Bra038208.1-P Field mustard endoplasmic reticulum 70.8 72.56
CDX95451 Canola endoplasmic reticulum, extracellular, vacuole 69.91 71.82
AT5G43060.1 Thale cress endoplasmic reticulum 61.28 59.83
AT1G47128.1 Thale cress endoplasmic reticulum 59.96 58.66
TraesCS2D01G547600.1 Wheat cytosol, mitochondrion, nucleus, plastid 45.8 56.25
AT4G36880.1 Thale cress vacuole 46.46 55.85
TraesCS2A01G545700.1 Wheat unclear 57.52 55.08
TraesCS2B01G576300.1 Wheat unclear 56.64 54.58
Zm00001d001900_P002 Maize endoplasmic reticulum, extracellular, plasma membrane 55.97 54.41
TraesCS2D01G546600.1 Wheat plasma membrane, vacuole 57.08 54.32
Zm00001d026577_P001 Maize extracellular, golgi, plasma membrane 56.19 54.04
EES13064 Sorghum extracellular, plasma membrane, vacuole 55.53 53.75
TraesCS7D01G265100.1 Wheat cytosol, nucleus, plastid 30.53 53.49
Os04t0670200-02 Rice extracellular 56.86 52.24
TraesCS2B01G577300.1 Wheat extracellular, golgi 53.54 51.6
TraesCS7B01G162200.1 Wheat endoplasmic reticulum 51.77 50.76
HORVU7Hr1G055310.1 Barley extracellular 52.43 50.75
TraesCS5D01G149800.1 Wheat endoplasmic reticulum 52.21 50.43
TraesCS2D01G547800.1 Wheat endoplasmic reticulum, extracellular 52.21 50.43
TraesCS2A01G546700.1 Wheat endoplasmic reticulum 52.21 50.43
TraesCS2A01G546300.1 Wheat endoplasmic reticulum, vacuole 52.21 50.32
EES11628 Sorghum extracellular 52.43 50.32
Os04t0670500-01 Rice extracellular 54.2 50.0
TraesCS7A01G264200.1 Wheat endoplasmic reticulum 52.21 49.79
TraesCS2B01G577500.1 Wheat endoplasmic reticulum 51.33 49.57
HORVU2Hr1G121440.2 Barley endoplasmic reticulum 54.65 49.4
AT4G23520.1 Thale cress endoplasmic reticulum 38.72 49.16
AT3G48340.1 Thale cress endoplasmic reticulum, extracellular 39.16 49.03
AT4G35350.1 Thale cress endoplasmic reticulum 38.5 49.01
AT1G20850.1 Thale cress endoplasmic reticulum 38.5 48.88
HORVU2Hr1G121150.1 Barley endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 51.77 48.15
AT1G09850.1 Thale cress endoplasmic reticulum 46.24 47.83
AT5G45890.1 Thale cress endoplasmic reticulum, golgi 36.28 47.4
AT5G50260.1 Thale cress endoplasmic reticulum 37.17 46.54
AT3G48350.1 Thale cress endoplasmic reticulum 36.95 45.88
AT4G11320.1 Thale cress endoplasmic reticulum 37.61 45.82
AT4G11310.1 Thale cress endoplasmic reticulum 36.5 45.33
Protein Annotations
Gene3D:3.10.20.500Gene3D:3.90.70.10MapMan:50.3.4EntrezGene:821473ProteinID:AEE76234.1ArrayExpress:AT3G19390
EnsemblPlantsGene:AT3G19390RefSeq:AT3G19390TAIR:AT3G19390RefSeq:AT3G19390-TAIR-GEnsemblPlants:AT3G19390.1TAIR:AT3G19390.1
EMBL:AY062725EMBL:AY093350ProteinID:BAB02463.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234
GO:GO:0016787GO:GO:0019538InterPro:GranulinInterPro:Granulin_sfInterPro:IPR037277RefSeq:NP_566633.1
PFAM:PF00112PFAM:PF00396PFAM:PF08246PO:PO:0000084PO:PO:0007611PO:PO:0007616
PO:PO:0009005PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0025022PO:PO:0025281PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639ScanProsite:PS00640
PANTHER:PTHR12411PANTHER:PTHR12411:SF352InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_ASInterPro:Pept_his_AS
InterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29UniProt:Q9LT78SMART:SM00277SMART:SM00645
SMART:SM00848SUPFAM:SSF54001SUPFAM:SSF57277SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00000A46F0
SEG:seg:::::
Description
RD21CProbable cysteine protease RD21C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT78]
Coordinates
chr3:+:6722825..6725110
Molecular Weight (calculated)
49310.1 Da
IEP (calculated)
5.404
GRAVY (calculated)
-0.368
Length
452 amino acids
Sequence
(BLAST)
001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.