Factsheet for Zm00001d001900_P002

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002065_P006
Zm00001d007301_P001
Zm00001d016017_P002
Zm00001d026458_P002
Zm00001d028108_P001
Zm00001d035557_P001
Zm00001d041417_P001
Zm00001d049099_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19390.1	Zm00001d007301_P001	AT1G21750.1	18676877
AT3G19390.1	Zm00001d016017_P002	AT1G21750.1	18676877
AT3G19390.1	Zm00001d028108_P001	AT1G21750.1	18676877
AT3G19390.1	Zm00001d035557_P001	AT1G21750.1	18676877
AT3G19390.1	Zm00001d041417_P001	AT1G21750.1	18676877
AT3G19390.1	Zm00001d049099_P005	AT1G21750.1	18676877
AT3G19390.1	Zm00001d002065_P006	AT1G47128.1	26016527
AT3G19390.1	Zm00001d026458_P002	AT1G47128.1	26016527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	90.75	89.79
EES13064	Sorghum	extracellular, plasma membrane, vacuole	89.68	89.29
TraesCS2B01G576300.1	Wheat	unclear	80.22	79.53
TraesCS2A01G545700.1	Wheat	unclear	80.0	78.81
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	79.78	78.11
Os04t0670200-02	Rice	extracellular	82.15	77.64
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	76.99	71.6
VIT_03s0180g00010.t01	Wine grape	extracellular	56.77	61.97
VIT_07s0031g00050.t01	Wine grape	nucleus	43.87	61.82
Zm00001d002065_P006	Maize	plasma membrane	61.94	61.54
Zm00001d026458_P002	Maize	endoplasmic reticulum	63.44	61.46
PGSC0003DMT400066566	Potato	endoplasmic reticulum	60.86	60.21
Solyc01g107760.2.1	Tomato	extracellular	60.65	60.0
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	46.67	59.78
PGSC0003DMT400064314	Potato	endoplasmic reticulum, extracellular, vacuole	46.24	59.56
PGSC0003DMT400053921	Potato	extracellular	45.16	57.69
CDX95457	Canola	endoplasmic reticulum, extracellular, vacuole	55.27	57.24
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	55.05	57.02
CDY46179	Canola	endoplasmic reticulum	54.62	56.44
KRH57968	Soybean	endoplasmic reticulum	44.3	56.28
Bra022418.1-P	Field mustard	endoplasmic reticulum	54.41	56.22
AT3G19390.1	Thale cress	endoplasmic reticulum	54.41	55.97
KRH07581	Soybean	endoplasmic reticulum	43.87	55.74
Bra038206.1-P	Field mustard	extracellular, plasma membrane, vacuole	53.76	55.56
CDY22445	Canola	vacuole	44.52	55.35
Bra010592.1-P	Field mustard	extracellular, golgi, vacuole	44.52	55.35
KRH04538	Soybean	extracellular	43.44	55.19
CDX75633	Canola	vacuole	44.09	54.81
CDX69285	Canola	endoplasmic reticulum, vacuole	44.09	54.81
AT4G36880.1	Thale cress	vacuole	44.3	54.79
Bra011746.1-P	Field mustard	vacuole	43.44	54.01
CDX95451	Canola	endoplasmic reticulum, extracellular, vacuole	50.97	53.86
CDY50154	Canola	endoplasmic reticulum	50.97	53.86
CDY44047	Canola	vacuole	44.3	53.65
AT3G19400.1	Thale cress	endoplasmic reticulum, vacuole	41.51	53.31
Zm00001d037301_P001	Maize	mitochondrion	24.3	53.3
Bra038208.1-P	Field mustard	endoplasmic reticulum	50.54	53.29
Solyc03g044230.1.1	Tomato	extracellular	43.23	53.03
Zm00001d004364_P001	Maize	nucleus	32.69	49.51
Zm00001d036541_P002	Maize	extracellular, plasma membrane	51.18	49.38
CDX99227	Canola	endoplasmic reticulum	53.55	49.11
Zm00001d042446_P001	Maize	extracellular	38.71	48.91
Zm00001d011787_P001	Maize	extracellular	40.43	48.83
Zm00001d045713_P001	Maize	extracellular	35.48	48.53
Zm00001d045711_P001	Maize	extracellular	35.48	48.53
Zm00001d037303_P001	Maize	extracellular	35.48	48.53
Zm00001d045709_P001	Maize	extracellular	32.69	48.41
Zm00001d025038_P001	Maize	endoplasmic reticulum, extracellular	36.34	48.01
Zm00001d035689_P001	Maize	extracellular	38.92	48.01
Zm00001d008796_P001	Maize	extracellular	35.27	47.81
Zm00001d004355_P001	Maize	extracellular	35.05	47.52
Zm00001d045708_P001	Maize	extracellular	33.33	47.11
Zm00001d004371_P001	Maize	extracellular	35.05	46.97
Zm00001d007464_P001	Maize	endoplasmic reticulum	38.28	46.35
Zm00001d013261_P001	Maize	extracellular	33.98	46.33
Zm00001d036542_P001	Maize	endoplasmic reticulum, golgi	40.43	46.31
Zm00001d012120_P001	Maize	endoplasmic reticulum	37.42	45.91
Zm00001d038650_P001	Maize	extracellular	44.52	45.0
Zm00001d031971_P002	Maize	endoplasmic reticulum	32.69	43.93
Zm00001d017834_P001	Maize	extracellular	28.6	42.77

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	EMBL:BT083851	MEROPS:C01.029	UniProt:C4IZ54
GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277
ProteinID:ONM12353.1	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF343	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277
SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0001A4C0BC	EnsemblPlantsGene:Zm00001d001900	EnsemblPlants:Zm00001d001900_P002	EnsemblPlants:Zm00001d001900_T002	SEG:seg	:

Description

Probable cysteine protease RD21B

Coordinates

chr2:+:2562960..2566600

Molecular Weight (calculated)

49916.8 Da

IEP (calculated)

5.916

GRAVY (calculated)

-0.308

Length

465 amino acids

Sequence
(BLAST)

001: MAALGLLLLL LLAVVGAANA AAPGGRMSII SYNEEHAARG LERTEPEART LYELWLAEHG RAYNALGERD RRFRVFWDNL RFVDAHNERA AEHGFRLGMN
101: QFADLTNDEF RAAYLGARIP ASRRRGTAVG ERYRHGGGAE ELPESVDWRE KGAVAPVKNQ GQCGSCWAFS AVSSVESVNQ IVTGEMVTLS EQELVECSTD
201: GGNSGCNGGL MDAAFDFIIK NGGIDTEGDY PYKAVDGKCD INRENAKVVS IDGFEDVPEN DEKSLQKAVA HQPVSVAIEA GGREFQLYKA GVFTGTCTTN
301: LDHGVVAVGY GTENGKDYWI VRNSWGAKWG EDGYIRMERN VNATTGKCGI AMMASYPTKK GANPPKPSPT PPTPPPPPVA PDNVCDENFS CAAGSTCCCA
401: FGFRNVCLVW GCCPMEGATC CKDHASCCPP GYPVCNVRAG TCSVSKNSPL SVKALKRTLA KLNSA

Best Arabidopsis Sequence Match ( AT1G47128.1 )
(BLAST)

001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA

Arabidopsis Description

RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.