Factsheet for Solyc01g107760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066566	Potato	endoplasmic reticulum	97.02	97.02
VIT_03s0180g00010.t01	Wine grape	extracellular	67.23	74.18
Solyc12g088670.1.1	Tomato	endoplasmic reticulum	62.55	63.09
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	48.51	62.81
Zm00001d001900_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	60.0	60.65
TraesCS2D01G547600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	47.23	60.33
Solyc04g082710.2.1	Tomato	cytosol	38.94	60.0
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	59.79	59.79
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	60.0	59.75
EES13064	Sorghum	extracellular, plasma membrane, vacuole	59.36	59.74
TraesCS2B01G576300.1	Wheat	unclear	59.57	59.7
TraesCS2A01G545700.1	Wheat	unclear	59.79	59.53
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	60.0	59.37
Solyc03g044230.1.1	Tomato	extracellular	47.66	59.1
Os04t0670200-02	Rice	extracellular	59.57	56.91
TraesCS7D01G265100.1	Wheat	cytosol, nucleus, plastid	31.06	56.59
TraesCS7B01G162200.1	Wheat	endoplasmic reticulum	55.11	56.18
TraesCS5D01G149800.1	Wheat	endoplasmic reticulum	55.53	55.77
HORVU7Hr1G055310.1	Barley	extracellular	55.11	55.46
Solyc12g094700.1.1	Tomato	extracellular	38.94	55.29
TraesCS7A01G264200.1	Wheat	endoplasmic reticulum	55.11	54.64
EES11628	Sorghum	extracellular	54.47	54.35
TraesCS2B01G577300.1	Wheat	extracellular, golgi	54.04	54.16
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	57.02	53.6
TraesCS2D01G547800.1	Wheat	endoplasmic reticulum, extracellular	53.19	53.42
TraesCS2A01G546300.1	Wheat	endoplasmic reticulum, vacuole	53.19	53.3
Solyc02g076970.1.1	Tomato	extracellular	31.7	53.02
TraesCS2A01G546700.1	Wheat	endoplasmic reticulum	52.77	52.99
Solyc03g111730.2.1	Tomato	endoplasmic reticulum	40.43	52.78
Os04t0670500-01	Rice	extracellular	54.89	52.65
TraesCS2B01G577500.1	Wheat	endoplasmic reticulum	52.34	52.56
Solyc12g056000.1.1	Tomato	endoplasmic reticulum	37.23	51.47
Solyc05g013920.2.1	Tomato	endoplasmic reticulum	39.15	51.4
Solyc12g056020.1.1	Tomato	extracellular	37.23	51.32
Solyc12g056010.1.1	Tomato	endoplasmic reticulum	37.02	51.18
HORVU2Hr1G121150.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	52.55	50.82
Solyc03g006200.1.1	Tomato	endoplasmic reticulum, extracellular	31.91	49.34
Solyc02g076910.2.1	Tomato	extracellular, golgi	34.47	46.15
Solyc02g077040.2.1	Tomato	extracellular	31.06	42.32
Solyc02g076980.2.1	Tomato	endoplasmic reticulum, golgi	29.36	40.0
Solyc03g006210.1.1	Tomato	extracellular	28.51	38.73
Solyc04g080880.2.1	Tomato	extracellular	43.62	24.26

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	MEROPS:C01.029	GO:GO:0003674	GO:GO:0003824
GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277	UniProt:K4B2Z2	PFAM:PF00112
PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640
PANTHER:PTHR12411	PANTHER:PTHR12411:SF352	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS
InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645	SMART:SM00848
SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g107760.2	EnsemblPlants:Solyc01g107760.2.1	TMHMM:TMhelix
UniParc:UPI0002767E70	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:95198657..95201134

Molecular Weight (calculated)

52010.7 Da

IEP (calculated)

5.369

GRAVY (calculated)

-0.529

Length

470 amino acids

Sequence
(BLAST)

001: MTYFRPLFLF LLTFFVLSSA LDMSIISYDE KHADLGATNH RTDDEVKGLY ESWIVKHGKN YNAIGEKEKR FEIFKDNLRF IDEQNAETRP YKLGLNRFSD
101: LTNDEYRALF VGGRFDKKTR LLKNPKSERY AFKAGEKLPE SVDWRQKGAV APVKDQGQCG SCWAFSTVGA VEGINQIVTG ELISLSEQEL VDCDKSYNQG
201: CNGGLMDYAF EFIKNNGGID TEADYPYRAK DGTCDSNRKN ARVVSIDGYE DVPINDEKSL MKALSNQPVS VAIEAGGRAF QHYSSGVFTG YCGTQLDHGV
301: VAIGYGTDNG SDYWIVRNSW GPNWGESGYI RLERNLANST SGKCGIAMEP SYPLKNGANP PNPGPSPPSP VAPSTVCDEY YSCTAGTTCC CIYKYGDYCF
401: GWGCCPYESA TCCDDNNSCC PHDYPVCDVN SGTCQMSKDS PLSVKALKRG PATARVNWSG MKSNRKVSYD

Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)

001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA

Arabidopsis Description

RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.