Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 8
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g107760.2.1 | Tomato | extracellular | 97.02 | 97.02 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 67.45 | 74.41 |
| PGSC0003DMT400053921 | Potato | extracellular | 49.15 | 63.46 |
| PGSC0003DMT400020654 | Potato | cytosol | 59.15 | 62.75 |
| PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 47.66 | 62.05 |
| Zm00001d001900_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 60.21 | 60.86 |
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 47.23 | 60.33 |
| Zm00001d026577_P001 | Maize | extracellular, golgi, plasma membrane | 60.0 | 60.0 |
| EES13064 | Sorghum | extracellular, plasma membrane, vacuole | 59.36 | 59.74 |
| TraesCS2B01G576300.1 | Wheat | unclear | 59.36 | 59.49 |
| TraesCS2A01G545700.1 | Wheat | unclear | 59.57 | 59.32 |
| TraesCS2D01G546600.1 | Wheat | plasma membrane, vacuole | 59.36 | 58.74 |
| PGSC0003DMT400086163 | Potato | cytosol | 28.72 | 57.94 |
| Os04t0670200-02 | Rice | extracellular | 59.79 | 57.11 |
| TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 31.06 | 56.59 |
| TraesCS7B01G162200.1 | Wheat | endoplasmic reticulum | 54.89 | 55.97 |
| TraesCS5D01G149800.1 | Wheat | endoplasmic reticulum | 55.53 | 55.77 |
| HORVU7Hr1G055310.1 | Barley | extracellular | 54.89 | 55.25 |
| PGSC0003DMT400025691 | Potato | endoplasmic reticulum, extracellular | 41.49 | 54.78 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 55.11 | 54.64 |
| EES11628 | Sorghum | extracellular | 54.26 | 54.14 |
| PGSC0003DMT400075600 | Potato | vacuole | 40.0 | 53.87 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 53.62 | 53.73 |
| HORVU2Hr1G121440.2 | Barley | endoplasmic reticulum | 56.81 | 53.4 |
| PGSC0003DMT400039210 | Potato | endoplasmic reticulum | 40.64 | 53.06 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 52.77 | 52.99 |
| TraesCS2A01G546300.1 | Wheat | endoplasmic reticulum, vacuole | 52.77 | 52.88 |
| Os04t0670500-01 | Rice | extracellular | 55.11 | 52.86 |
| TraesCS2A01G546700.1 | Wheat | endoplasmic reticulum | 52.34 | 52.56 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 52.34 | 52.56 |
| PGSC0003DMT400012881 | Potato | endoplasmic reticulum | 37.23 | 51.47 |
| PGSC0003DMT400026457 | Potato | extracellular | 34.04 | 50.96 |
| PGSC0003DMT400026461 | Potato | extracellular | 36.81 | 50.88 |
| PGSC0003DMT400027975 | Potato | endoplasmic reticulum | 38.51 | 50.7 |
| HORVU2Hr1G121150.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 52.34 | 50.62 |
| PGSC0003DMT400012877 | Potato | endoplasmic reticulum, extracellular, vacuole | 36.6 | 50.59 |
| PGSC0003DMT400012885 | Potato | extracellular | 32.77 | 49.84 |
| PGSC0003DMT400026448 | Potato | endoplasmic reticulum, extracellular, vacuole | 34.89 | 47.26 |
| PGSC0003DMT400009624 | Potato | extracellular | 42.34 | 45.33 |
| PGSC0003DMT400026491 | Potato | nucleus | 27.23 | 42.38 |
| PGSC0003DMT400026493 | Potato | extracellular, golgi, vacuole | 30.85 | 42.15 |
| PGSC0003DMT400026464 | Potato | endoplasmic reticulum, extracellular | 29.57 | 40.41 |
| PGSC0003DMT400011188 | Potato | endoplasmic reticulum | 29.15 | 39.37 |
Protein Annotations
| EntrezGene:102601025 | Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | MEROPS:C01.029 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | UniProt:M1CFS2 |
| PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | EnsemblPlantsGene:PGSC0003DMG402025870 | PGSC:PGSC0003DMG402025870 | EnsemblPlants:PGSC0003DMT400066566 |
| PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C |
| InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000295006F | RefSeq:XP_006346518.1 | SEG:seg | : |
Description
Cysteine protease [Source:PGSC_GENE;Acc:PGSC0003DMG402025870]
Coordinates
chr1:-:84148666..84151175
Molecular Weight (calculated)
52029.6 Da
IEP (calculated)
5.025
GRAVY (calculated)
-0.516
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFFRPLFFF LLTFFVLSSA LDMSIISYGE KHADLGVTSH RTDDEVKGLY ESWIVKHGKN YNAIGEKEKR FEIFKDNLRF IDEQNAETRP YKLGLNRFSD
101: LTNDEYRAVF VGGRFDKKTR LLKNPKSERY AFKAGEELPE SVDWRQKGAV APVKDQGQCG SCWAFSTVGA VEGINQIVTG ELISLSEQEL VDCDKSYNQG
201: CNGGLMDYAF DFIKNNGGID TEADYPYRAQ DGTCDSNRKN ARVVSIDGYE DVPINDEKSL MKALSNQPVS VAIEAGGRAF QHYSSGVFTG YCGTQLDHGV
301: VAVGYGTDNG SDYWIVRNSW GPNWGESGYI RLERNLANST SGKCGIAMEP SYPLKNGANP PNPGPSPPSP VAPSTVCDEY YSCTEGTTCC CIYKYGDYCF
401: GWGCCPYESA TCCDDNNSCC PHDYPVCDVN AGTCQMSKDS PLNVKALKRS PATARVNWSG MKSNRKVSYD
101: LTNDEYRAVF VGGRFDKKTR LLKNPKSERY AFKAGEELPE SVDWRQKGAV APVKDQGQCG SCWAFSTVGA VEGINQIVTG ELISLSEQEL VDCDKSYNQG
201: CNGGLMDYAF DFIKNNGGID TEADYPYRAQ DGTCDSNRKN ARVVSIDGYE DVPINDEKSL MKALSNQPVS VAIEAGGRAF QHYSSGVFTG YCGTQLDHGV
301: VAVGYGTDNG SDYWIVRNSW GPNWGESGYI RLERNLANST SGKCGIAMEP SYPLKNGANP PNPGPSPPSP VAPSTVCDEY YSCTEGTTCC CIYKYGDYCF
401: GWGCCPYESA TCCDDNNSCC PHDYPVCDVN AGTCQMSKDS PLNVKALKRS PATARVNWSG MKSNRKVSYD
001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
Arabidopsis Description
RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.