Factsheet for PGSC0003DMT400009624

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61098	Soybean	endoplasmic reticulum, extracellular, plasma membrane	62.41	62.41
Bra019982.1-P	Field mustard	extracellular, golgi	61.73	61.17
CDX93470	Canola	plasma membrane	61.73	61.17
CDX94938	Canola	extracellular, vacuole	61.5	61.09
AT1G09850.1	Thale cress	endoplasmic reticulum	60.59	60.87
VIT_18s0001g13270.t01	Wine grape	extracellular	59.91	60.32
GSMUA_Achr4P17710_001	Banana	endoplasmic reticulum, extracellular	59.45	59.32
TraesCS1D01G327000.1	Wheat	extracellular	59.91	57.93
TraesCS1A01G325400.1	Wheat	extracellular	59.45	57.62
TraesCS1B01G338500.1	Wheat	endoplasmic reticulum, unclear	59.68	56.71
Zm00001d038650_P001	Maize	extracellular	58.77	56.09
EES18460	Sorghum	endoplasmic reticulum	58.77	55.84
Os05t0508300-01	Rice	plasma membrane	56.26	54.89
PGSC0003DMT400086163	Potato	cytosol	28.02	52.79
HORVU1Hr1G075530.3	Barley	plastid	58.54	50.69
Solyc04g080880.2.1	Tomato	extracellular	94.99	49.35
PGSC0003DMT400075600	Potato	vacuole	37.59	47.28
PGSC0003DMT400026457	Potato	extracellular	33.49	46.82
PGSC0003DMT400012881	Potato	endoplasmic reticulum	36.22	46.76
PGSC0003DMT400026461	Potato	extracellular	35.99	46.47
PGSC0003DMT400012877	Potato	endoplasmic reticulum, extracellular, vacuole	35.99	46.47
PGSC0003DMT400025691	Potato	endoplasmic reticulum, extracellular	37.36	46.07
PGSC0003DMT400039210	Potato	endoplasmic reticulum	36.67	44.72
PGSC0003DMT400027975	Potato	endoplasmic reticulum	36.22	44.54
PGSC0003DMT400012885	Potato	extracellular	31.21	44.34
PGSC0003DMT400053921	Potato	extracellular	36.45	43.96
PGSC0003DMT400026448	Potato	endoplasmic reticulum, extracellular, vacuole	34.4	43.52
PGSC0003DMT400064314	Potato	endoplasmic reticulum, extracellular, vacuole	35.54	43.21
PGSC0003DMT400020654	Potato	cytosol	43.51	43.12
PGSC0003DMT400066566	Potato	endoplasmic reticulum	45.33	42.34
PGSC0003DMT400026491	Potato	nucleus	28.93	42.05
PGSC0003DMT400026464	Potato	endoplasmic reticulum, extracellular	32.35	41.28
PGSC0003DMT400026493	Potato	extracellular, golgi, vacuole	30.98	39.53
PGSC0003DMT400011188	Potato	endoplasmic reticulum	30.52	38.51

Protein Annotations

EntrezGene:102578718	Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	MEROPS:C01.A13	GO:GO:0003674
GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234
GO:GO:0016787	GO:GO:0019538	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277	UniProt:M0ZWN3
PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	EnsemblPlantsGene:PGSC0003DMG400003756	PGSC:PGSC0003DMG400003756	EnsemblPlants:PGSC0003DMT400009624
PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF387
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277
SignalP:SignalP-noTM	UniParc:UPI000295DBCE	RefSeq:XP_006341989.1	SEG:seg	:	:

Description

Cysteine protease [Source:PGSC_GENE;Acc:PGSC0003DMG400003756]

Coordinates

chr4:-:70259382..70263672

Molecular Weight (calculated)

48144.6 Da

IEP (calculated)

6.161

GRAVY (calculated)

-0.351

Length

439 amino acids

Sequence
(BLAST)

001: MNWLLPSLVL VLLIFQQPFC TCSSISDLFE TWCQQNGKKY SSEQERVYRF KVFEENYAYI TEHNSKENSS YTLGLNAYSD LTHHEFRNSF LGLSSSANDF
101: IRLKGRGSGS SETGVLSDVD APSSLDWREK GAVTDVKNQG SCGACWSFSA TGAMEGINKI TTGSLVSLSE QELIDCDRSY NEGCGGGLMD YAFEFVIKNG
201: GIDTEKDYPF REREGTCNKN KLQRHVVTID GYTDIPQNDE DKLLKAVATQ PVSVGICGSA RAFQSYSKGI FTGPCSTALD HAVLIVGYGS ENGVDYWIIK
301: NSWGTSWGIN GYIHMQRNSG NQEGICGINK LASYPTKTSP NPPTPPAPGP SKCSMFTSCG QGETCCCGSK FLGICLSWKC CGLDSAVCCK DGRHCCPQDY
401: PICDTSRNLC LKRMNNATIV QQPQKEAFTG KFGGLIYPF

Best Arabidopsis Sequence Match ( AT1G09850.1 )
(BLAST)

001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM

Arabidopsis Description

XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.