CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
golgi 6
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019982.1-P	Field mustard	extracellular, golgi	99.1	99.1
CDX94938	Canola	extracellular, vacuole	96.61	96.83
AT1G09850.1	Thale cress	endoplasmic reticulum	88.71	89.93
KRH61098	Soybean	endoplasmic reticulum, extracellular, plasma membrane	61.4	61.96
PGSC0003DMT400009624	Potato	extracellular	61.17	61.73
GSMUA_Achr4P17710_001	Banana	endoplasmic reticulum, extracellular	60.72	61.14
VIT_18s0001g13270.t01	Wine grape	extracellular	58.24	59.17
Zm00001d038650_P001	Maize	extracellular	60.5	58.26
Os05t0508300-01	Rice	plasma membrane	58.92	58.0
TraesCS1D01G327000.1	Wheat	extracellular	58.92	57.49
EES18460	Sorghum	endoplasmic reticulum	59.82	57.36
TraesCS1A01G325400.1	Wheat	extracellular	58.24	56.95
TraesCS1B01G338500.1	Wheat	endoplasmic reticulum, unclear	58.47	56.06
HORVU1Hr1G075530.3	Barley	plastid	57.56	50.3
CDY39574	Canola	cytosol, endoplasmic reticulum, nucleus	33.18	50.0
CDY31861	Canola	endoplasmic reticulum	38.37	48.16
CDY01351	Canola	endoplasmic reticulum	37.92	47.86
CDX75633	Canola	vacuole	40.41	47.86
CDX96617	Canola	endoplasmic reticulum	35.21	47.71
CDY22445	Canola	vacuole	39.95	47.33
CDX69285	Canola	endoplasmic reticulum, vacuole	39.95	47.33
CDY33651	Canola	endoplasmic reticulum	34.76	47.24
CDX75496	Canola	endoplasmic reticulum	37.92	47.19
CDY22370	Canola	extracellular	48.76	46.96
CDX71540	Canola	extracellular	48.76	46.96
CDX95457	Canola	endoplasmic reticulum, extracellular, vacuole	47.18	46.55
CDY06760	Canola	endoplasmic reticulum	47.86	46.39
CDY17193	Canola	endoplasmic reticulum	33.18	46.23
CDY46179	Canola	endoplasmic reticulum	46.95	46.22
CDY63586	Canola	endoplasmic reticulum	47.86	46.19
CDY17044	Canola	endoplasmic reticulum	47.86	46.19
CDY17093	Canola	endoplasmic reticulum	47.63	46.17
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	46.73	46.1
CDY25228	Canola	extracellular	47.63	45.87
CDY44047	Canola	vacuole	38.83	44.79
CDX69132	Canola	plastid	38.37	44.74
CDY58055	Canola	golgi, nucleus, plastid	32.28	44.41
CDY50154	Canola	endoplasmic reticulum	44.02	44.32
CDY48168	Canola	endoplasmic reticulum	35.89	44.29
CDX95451	Canola	endoplasmic reticulum, extracellular, vacuole	43.79	44.09
CDX77621	Canola	endoplasmic reticulum, extracellular	33.41	43.15
CDY34045	Canola	endoplasmic reticulum	34.76	42.66
CDY50483	Canola	endoplasmic reticulum	33.18	42.49
CDX83168	Canola	endoplasmic reticulum	34.31	42.11
CDX87758	Canola	endoplasmic reticulum	32.73	41.91
CDY37617	Canola	endoplasmic reticulum, extracellular	34.76	41.62
CDY25281	Canola	extracellular	34.76	41.51
CDY39575	Canola	endoplasmic reticulum	34.31	41.3
CDY25283	Canola	vacuole	34.76	41.29
CDX99227	Canola	endoplasmic reticulum	46.5	40.63
CDY16132	Canola	endoplasmic reticulum, extracellular, vacuole	34.09	39.84
CDY63262	Canola	extracellular, plasma membrane, vacuole	21.9	39.11
CDY02431	Canola	nucleus	39.5	38.98
CDY27951	Canola	endoplasmic reticulum	39.5	38.13
CDY31498	Canola	cytosol	25.06	37.12
Solyc04g080880.2.1	Tomato	extracellular	61.63	32.31

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:A0A078DVT5	MEROPS:C01.A13	EnsemblPlants:CDX93470
ProteinID:CDX93470	ProteinID:CDX93470.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00156139001	InterPro:Granulin
InterPro:Granulin_sf	InterPro:IPR037277	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705
ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF387	InterPro:Papain_like_cys_pep_sf
InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29
SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM
UniParc:UPI0004EF17AA	SEG:seg	:	:	:	:

Description

BnaA06g05780D

Coordinates

chrLK031876:-:340211..342788

Molecular Weight (calculated)

48823.5 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.363

Length

443 amino acids

Sequence
(BLAST)

001: MSPSSSSSFV SLTFFSLLLV SSLSFSSSSS DDISELFDAW CQRHGKTYAS EEERQHRIRI FKDNHDFVTR HNNIANSTYS LSLNAFADLT HHEFKASRLG
101: GFSASSAPLL MAKGQSVENV RGKVPDSVDW RKKGAVTNVK DQGSCGACWS FSATGAMEGI NQIVTGDLIS LSEQELIDCD KSYNDGCNGG LMDYAFQFVI
201: KNHGIDTEKD YPYQERDGTC KKDKLNRKVV TIDSYAGVKS NDEKALLEAV AAQPVSVGIC GSERAFQLYS KGIFSGPCST SLDHAVLIVG YGSENGVDYW
301: IVKNSWGKSW GMDGFMHMQR NTGNAEGVCG INMLASYPIK THPNPPPPSP PGPTKCNLFT YCSADETCCC ARNLFGLCFS WKCCELESAV CCKDGRHCCP
401: RDYPVCDTTR SLCLKKTGNF TEIKPFWKKN ASNKLGKFEE WVM

Best Arabidopsis Sequence Match ( AT1G09850.1 )
(BLAST)

001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM

Arabidopsis Description

XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.