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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, nucleus, plastid

Predictor Summary:
  • nucleus 2
  • extracellular 1
  • golgi 2
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, nucleus, plastid
Any Predictor:golgi, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX77719
CDX77721
CDX77779
CDX77781
CDX77784
CDX80270
CDX84467
CDX87694
CDY17722
CDY17724
CDY33037
CDY33502
CDY37163
CDY37164
CDY37166
CDY41336
CDY43629
CDY43630
CDY53682
CDY56707
CDY67243

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G45890.1 CDX77719 AT5G47590.1 21798944
AT5G45890.1 CDX77721 AT5G47590.1 21798944
AT5G45890.1 CDX77779 AT5G47590.1 21798944
AT5G45890.1 CDX77781 AT5G47590.1 21798944
AT5G45890.1 CDX77784 AT5G47590.1 21798944
AT5G45890.1 CDX80270 AT5G47590.1 21798944
AT5G45890.1 CDX84467 AT5G47590.1 21798944
AT5G45890.1 CDX87694 AT5G47590.1 21798944
AT5G45890.1 CDY17722 AT5G47590.1 21798944
AT5G45890.1 CDY17724 AT5G47590.1 21798944
AT5G45890.1 CDY33037 AT5G47590.1 21798944
AT5G45890.1 CDY33502 AT5G47590.1 21798944
AT5G45890.1 CDY37163 AT5G47590.1 21798944
AT5G45890.1 CDY37164 AT5G47590.1 21798944
AT5G45890.1 CDY37166 AT5G47590.1 21798944
AT5G45890.1 CDY41336 AT5G47590.1 21798944
AT5G45890.1 CDY43629 AT5G47590.1 21798944
AT5G45890.1 CDY43630 AT5G47590.1 21798944
AT5G45890.1 CDY53682 AT5G47590.1 21798944
AT5G45890.1 CDY56707 AT5G47590.1 21798944
AT5G45890.1 CDY67243 AT5G47590.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025046.1-P Field mustard endoplasmic reticulum, extracellular 100.0 93.6
CDX77621 Canola endoplasmic reticulum, extracellular 91.61 86.01
CDX87758 Canola endoplasmic reticulum 77.02 71.68
CDY50483 Canola endoplasmic reticulum 77.02 71.68
AT5G45890.1 Thale cress endoplasmic reticulum, golgi 75.78 70.52
PGSC0003DMT400026448 Potato endoplasmic reticulum, extracellular, vacuole 57.14 53.03
Solyc02g076910.2.1 Tomato extracellular, golgi 56.52 51.85
CDY39574 Canola cytosol, endoplasmic reticulum, nucleus 45.96 50.34
TraesCS5D01G401300.1 Wheat extracellular 53.73 50.14
TraesCS5A01G391500.1 Wheat endoplasmic reticulum, extracellular 53.73 50.0
HORVU5Hr1G095580.1 Barley endoplasmic reticulum, extracellular 53.42 49.28
Zm00001d013261_P001 Maize extracellular 50.0 47.21
EER93437 Sorghum endoplasmic reticulum 51.24 46.74
CDX75496 Canola endoplasmic reticulum 50.62 45.79
CDX83168 Canola endoplasmic reticulum 50.93 45.43
CDY34045 Canola endoplasmic reticulum 50.93 45.43
CDY31861 Canola endoplasmic reticulum 48.45 44.19
CDY01351 Canola endoplasmic reticulum 47.83 43.87
CDY48168 Canola endoplasmic reticulum 48.76 43.73
CDX96617 Canola endoplasmic reticulum 44.1 43.43
CDY17193 Canola endoplasmic reticulum 42.86 43.4
CDY33651 Canola endoplasmic reticulum 43.79 43.25
CDX69132 Canola plastid 50.93 43.16
CDY39575 Canola endoplasmic reticulum 46.27 40.49
CDX69285 Canola endoplasmic reticulum, vacuole 46.89 40.37
CDX75633 Canola vacuole 46.89 40.37
CDY22445 Canola vacuole 46.58 40.11
CDY44047 Canola vacuole 46.58 39.06
CDY37617 Canola endoplasmic reticulum, extracellular 44.1 38.38
CDY25281 Canola extracellular 43.48 37.74
CDY25283 Canola vacuole 42.86 37.0
CDY63262 Canola extracellular, plasma membrane, vacuole 27.95 36.29
CDY50157 Canola endoplasmic reticulum, extracellular, vacuole 50.31 36.08
CDX95457 Canola endoplasmic reticulum, extracellular, vacuole 50.0 35.86
CDY16132 Canola endoplasmic reticulum, extracellular, vacuole 41.61 35.36
CDY46179 Canola endoplasmic reticulum 49.07 35.11
CDY17044 Canola endoplasmic reticulum 50.0 35.08
CDY63586 Canola endoplasmic reticulum 49.69 34.86
CDY22370 Canola extracellular 49.69 34.78
CDX71540 Canola extracellular 49.69 34.78
CDY06760 Canola endoplasmic reticulum 49.07 34.57
CDY25228 Canola extracellular 49.38 34.57
CDY31498 Canola cytosol 31.99 34.45
CDY17093 Canola endoplasmic reticulum 48.45 34.14
CDY50154 Canola endoplasmic reticulum 46.58 34.09
CDX95451 Canola endoplasmic reticulum, extracellular, vacuole 46.58 34.09
CDX93470 Canola plasma membrane 44.41 32.28
CDX94938 Canola extracellular, vacuole 44.1 32.13
CDX99227 Canola endoplasmic reticulum 48.76 30.97
CDY27951 Canola endoplasmic reticulum 39.75 27.89
CDY02431 Canola nucleus 36.96 26.5
Protein Annotations
MapMan:19.4.1.1Gene3D:3.90.70.10GO:A0A078J304UniProt:A0A078J304MEROPS:C01.117EnsemblPlants:CDY58055
ProteinID:CDY58055ProteinID:CDY58055.1ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234GO:GO:0016787GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00023043001PFAM:PF00112PFAM:PF08246PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639
ScanProsite:PS00640PANTHER:PTHR12411PANTHER:PTHR12411:SF297InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_AS
InterPro:Pept_his_ASInterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29SMART:SM00645SMART:SM00848
SUPFAM:SSF54001SignalP:SignalP-noTMUniParc:UPI0004EED0CF:::
Description
BnaA06g40240DBnaA06g40240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J304]
Coordinates
chrLK033631:+:29274..31212
Molecular Weight (calculated)
35482.2 Da
IEP (calculated)
9.112
GRAVY (calculated)
-0.352
Length
322 amino acids
Sequence
(BLAST)
001: MALTQIQIFL IVSLRHAEWM TEHGRVYADA NEKNNRYAVF KRNVERIERL NDVQSGLTFK LAVNQFADLT NEEFRSMYTG FKGNSVLSSR TKPTSFRYQN
101: VSSDALPVSV DWRKKGAVTP IKDQGLCGSC WAFSAVAAIE GVAQIKKGKL ISLSEQELVD CDTNDGGCMG GLMDTAFNYT ITIGGLTSES NYPYKSTNGT
201: CNFNKTKQIA TSIKGFEDVP ANDEKALMKA VAHHPVSIGI AGGDIGFQFY SSGVFSGECT THLDHGVTAV GYGRSKNGLK YWILKNSWGP KWGERGYMRI
301: KKDIKPKHGQ CGLAMNASYP TM
Best Arabidopsis Sequence Match ( AT5G45890.1 )
(BLAST)
001: MALKHMQIFL FVAIFSSFCF SITLSRPLDN ELIMQKRHIE WMTKHGRVYA DVKEENNRYV VFKNNVERIE HLNSIPAGRT FKLAVNQFAD LTNDEFRSMY
101: TGFKGVSALS SQSQTKMSPF RYQNVSSGAL PVSVDWRKKG AVTPIKNQGS CGCCWAFSAV AAIEGATQIK KGKLISLSEQ QLVDCDTNDF GCEGGLMDTA
201: FEHIKATGGL TTESNYPYKG EDATCNSKKT NPKATSITGY EDVPVNDEQA LMKAVAHQPV SVGIEGGGFD FQFYSSGVFT GECTTYLDHA VTAIGYGEST
301: NGSKYWIIKN SWGTKWGESG YMRIQKDVKD KQGLCGLAMK ASYPTI
Arabidopsis Description
SAG12Senescence-specific cysteine protease SAG12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ47]
SUBAcon: [golgi,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.