Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17722 | Canola | cytosol | 94.59 | 94.23 |
| CDX77784 | Canola | cytosol | 83.78 | 84.44 |
| CDY17724 | Canola | cytosol | 61.39 | 63.1 |
| CDX77779 | Canola | cytosol | 61.39 | 61.63 |
| CDX77719 | Canola | cytosol | 54.05 | 61.14 |
| AT5G47590.1 | Thale cress | cytosol | 60.62 | 59.47 |
| CDX80270 | Canola | cytosol | 57.92 | 57.03 |
| CDY56707 | Canola | cytosol | 57.53 | 56.44 |
| CDY37163 | Canola | mitochondrion | 42.47 | 56.12 |
| CDY41336 | Canola | cytosol | 56.37 | 54.89 |
| CDX84467 | Canola | cytosol | 22.78 | 54.63 |
| CDX87694 | Canola | cytosol | 41.31 | 54.59 |
| CDX77721 | Canola | cytosol | 56.37 | 54.48 |
| CDY53682 | Canola | cytosol | 54.83 | 53.79 |
| CDY33502 | Canola | cytosol | 54.44 | 53.21 |
| CDY37166 | Canola | cytosol | 46.33 | 52.86 |
| CDY43629 | Canola | cytosol | 38.22 | 52.38 |
| CDY67243 | Canola | cytosol | 35.14 | 51.12 |
| CDY37164 | Canola | mitochondrion | 33.59 | 47.8 |
| CDY33037 | Canola | cytosol | 55.6 | 42.73 |
| CDY43630 | Canola | cytosol | 16.22 | 36.21 |
| CDY09681 | Canola | cytosol | 27.41 | 30.87 |
| CDY32265 | Canola | cytosol | 29.73 | 29.06 |
| CDY50850 | Canola | cytosol | 29.34 | 28.68 |
| CDX90510 | Canola | cytosol | 28.96 | 28.63 |
| CDY53640 | Canola | cytosol | 28.96 | 28.3 |
| CDX90513 | Canola | cytosol | 26.25 | 27.2 |
| CDX90512 | Canola | cytosol | 25.87 | 27.02 |
| CDY09679 | Canola | cytosol | 25.87 | 26.91 |
| CDY40538 | Canola | cytosol | 27.41 | 26.79 |
| CDY09678 | Canola | cytosol | 27.8 | 26.37 |
| CDY50905 | Canola | cytosol | 28.19 | 25.8 |
| CDX90509 | Canola | cytosol | 25.48 | 24.91 |
| CDY40537 | Canola | cytosol | 21.62 | 24.89 |
| CDX90508 | Canola | extracellular | 13.51 | 24.82 |
| CDY09677 | Canola | extracellular | 13.13 | 24.82 |
| CDY09703 | Canola | plastid | 24.32 | 24.71 |
| CDY32266 | Canola | cytosol | 21.24 | 24.44 |
| CDY63876 | Canola | cytosol | 23.94 | 23.85 |
| CDY46005 | Canola | mitochondrion | 14.67 | 22.89 |
| CDY09683 | Canola | cytosol | 11.97 | 22.46 |
| CDY46006 | Canola | cytosol | 20.46 | 21.12 |
Protein Annotations
| EnsemblPlants:CDX77781 | EnsemblPlantsGene:GSBRNA2T00128819001 | Gene3D:2.60.40.790 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 |
| PANTHER:PTHR11527 | PANTHER:PTHR11527:SF95 | ProteinID:CDX77781 | ProteinID:CDX77781.1 | SEG:seg | SUPFAM:SSF49764 |
| UniParc:UPI0004EDBFD7 | MapMan:35.1 | : | : | : | : |
Description
BnaC07g20350D
Coordinates
chrLK031812:-:1762603..1763759
Molecular Weight (calculated)
28000.1 Da
IEP (calculated)
6.164
GRAVY (calculated)
-0.288
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGFTTCIDI STLPTDMEGF YATNNQFQKR GPKGFIQVKA LDDDKLYVRV DLPGVPDDAV HHRVDAVRQK VVFFSAVTFN DGYEKQGVRE YSGTAGLGCD
101: CCEITGVEAK MKNGVLRMIL SRVKVKDHDK KCTHTVPPFT GKSGGRVEEH PFVVKGRKRA FVGEPTADGG LFFAVDVPGV GDGDVEVLAN ESEIKFTAEV
201: KNVSEHDESG RLYLGSVDTS WSGDSAANSL LSHNITGAVN FGVLKVLISP RPNTGGNNE
101: CCEITGVEAK MKNGVLRMIL SRVKVKDHDK KCTHTVPPFT GKSGGRVEEH PFVVKGRKRA FVGEPTADGG LFFAVDVPGV GDGDVEVLAN ESEIKFTAEV
201: KNVSEHDESG RLYLGSVDTS WSGDSAANSL LSHNITGAVN FGVLKVLISP RPNTGGNNE
001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.