CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09677	Canola	extracellular	27.31	51.82
CDY40538	Canola	cytosol	52.69	51.7
CDX90510	Canola	cytosol	51.54	51.15
CDY09679	Canola	cytosol	48.46	50.6
CDY32265	Canola	cytosol	49.62	48.68
CDX90508	Canola	extracellular	26.15	48.23
CDY53640	Canola	cytosol	48.85	47.92
CDY50850	Canola	cytosol	48.46	47.55
CDY40537	Canola	cytosol	38.85	44.89
CDY32266	Canola	cytosol	38.46	44.44
CDY09681	Canola	cytosol	35.0	39.57
CDY09678	Canola	cytosol	40.0	38.1
CDX90512	Canola	cytosol	34.62	36.29
CDX90513	Canola	cytosol	34.62	36.0
CDY46005	Canola	mitochondrion	21.92	34.34
CDY09703	Canola	plastid	33.46	34.12
CDY09683	Canola	cytosol	18.08	34.06
CDX90509	Canola	cytosol	33.85	33.21
CDY50905	Canola	cytosol	35.77	32.86
CDY43629	Canola	cytosol	19.23	26.45
CDY41336	Canola	cytosol	26.15	25.56
CDY56707	Canola	cytosol	25.38	25.0
CDX77784	Canola	cytosol	24.62	24.9
CDX77779	Canola	cytosol	24.23	24.42
CDY17724	Canola	cytosol	23.46	24.21
CDX80270	Canola	cytosol	24.23	23.95
CDX77781	Canola	cytosol	23.85	23.94
CDX77721	Canola	cytosol	24.23	23.51
CDY17722	Canola	cytosol	23.46	23.46
CDY53682	Canola	cytosol	23.46	23.11
CDY37163	Canola	mitochondrion	17.31	22.96
CDX77719	Canola	cytosol	20.0	22.71
CDX87694	Canola	cytosol	16.15	21.43
CDX84467	Canola	cytosol	8.85	21.3
CDY46006	Canola	cytosol	19.62	20.32
CDY37166	Canola	cytosol	17.69	20.26
CDY37164	Canola	mitochondrion	13.85	19.78
CDY67243	Canola	cytosol	13.46	19.66
CDY33502	Canola	cytosol	20.0	19.62
CDY33037	Canola	cytosol	24.62	18.99
CDY43630	Canola	cytosol	7.69	17.24

Protein Annotations

EnsemblPlants:CDY63876	EnsemblPlantsGene:GSBRNA2T00039697001	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031	ProteinID:CDY63876	ProteinID:CDY63876.1
SUPFAM:SSF49764	UniParc:UPI0004EEF423	UniProt:A0A078JC77	MapMan:35.1	:	:

Description

BnaCnng42790DBnaCnng42790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC77]

Coordinates

chrLK034362:+:5794..6977

Molecular Weight (calculated)

28627.4 Da

IEP (calculated)

8.443

GRAVY (calculated)

-0.177

Length

260 amino acids

Sequence
(BLAST)

001: MVVSLPPQSQ TSSLFYGVNN PYLKNGPKGF KEYKILKNGD TYLRIDLPGV PMKAAVEVSL WADDKGVEAL VDAPKQHKHD SSQRTYCPII GFMCGRCKVL
101: RFTSQVCDGV LRLVLTPTAR ILGGRFLGGA DWEETYFCSS AAHWLPYASD PYDPSLTGPV LEPNPSVNEG SPMAYESKRL PNGSLYVRVD MPGVPKDRFT
201: VSVADGRVTV TGEAPAVSHD SDGRFYSGDV ALLDTLVTFR RRWIKTIVKD GVIRLIIPNL

Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)

001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.