Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32265 | Canola | cytosol | 83.4 | 83.4 |
| CDY09677 | Canola | extracellular | 32.45 | 62.77 |
| AT4G16540.1 | Thale cress | cytosol | 53.96 | 61.64 |
| AT2G03020.1 | Thale cress | cytosol | 58.87 | 61.18 |
| CDX90508 | Canola | extracellular | 30.94 | 58.16 |
| CDX90510 | Canola | cytosol | 56.98 | 57.63 |
| CDY53640 | Canola | cytosol | 56.98 | 56.98 |
| CDY09679 | Canola | cytosol | 53.21 | 56.63 |
| CDY50850 | Canola | cytosol | 56.6 | 56.6 |
| CDY40537 | Canola | cytosol | 47.55 | 56.0 |
| CDY32266 | Canola | cytosol | 47.55 | 56.0 |
| CDY63876 | Canola | cytosol | 51.7 | 52.69 |
| CDY09681 | Canola | cytosol | 34.72 | 40.0 |
| CDY09678 | Canola | cytosol | 41.13 | 39.93 |
| CDY09703 | Canola | plastid | 37.74 | 39.22 |
| CDY09683 | Canola | cytosol | 20.38 | 39.13 |
| CDY50905 | Canola | cytosol | 41.13 | 38.52 |
| CDX90513 | Canola | cytosol | 35.85 | 38.0 |
| CDX90512 | Canola | cytosol | 34.72 | 37.1 |
| CDY46005 | Canola | mitochondrion | 23.02 | 36.75 |
| CDX90509 | Canola | cytosol | 35.85 | 35.85 |
| CDY37163 | Canola | mitochondrion | 23.4 | 31.63 |
| CDY43629 | Canola | cytosol | 22.26 | 31.22 |
| CDX77779 | Canola | cytosol | 29.43 | 30.23 |
| CDY17724 | Canola | cytosol | 27.92 | 29.37 |
| CDX77784 | Canola | cytosol | 28.3 | 29.18 |
| CDY37166 | Canola | cytosol | 24.91 | 29.07 |
| CDY53682 | Canola | cytosol | 28.68 | 28.79 |
| CDX87694 | Canola | cytosol | 20.75 | 28.06 |
| CDY41336 | Canola | cytosol | 27.55 | 27.44 |
| CDX77781 | Canola | cytosol | 26.79 | 27.41 |
| CDY56707 | Canola | cytosol | 27.17 | 27.27 |
| CDX77719 | Canola | cytosol | 23.4 | 27.07 |
| CDX80270 | Canola | cytosol | 26.42 | 26.62 |
| CDY17722 | Canola | cytosol | 26.04 | 26.54 |
| CDX77721 | Canola | cytosol | 26.79 | 26.49 |
| CDY46006 | Canola | cytosol | 24.53 | 25.9 |
| CDY67243 | Canola | cytosol | 17.36 | 25.84 |
| CDY37164 | Canola | mitochondrion | 17.74 | 25.82 |
| CDX84467 | Canola | cytosol | 10.19 | 25.0 |
| CDY33502 | Canola | cytosol | 23.4 | 23.4 |
| CDY33037 | Canola | cytosol | 26.04 | 20.47 |
| CDY43630 | Canola | cytosol | 8.3 | 18.97 |
Protein Annotations
| EnsemblPlants:CDY40538 | EnsemblPlantsGene:GSBRNA2T00069856001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF95 | PFscan:PS01031 | ProteinID:CDY40538 |
| ProteinID:CDY40538.1 | SUPFAM:SSF49764 | UniParc:UPI0004EE65D1 | UniProt:A0A078HUU6 | MapMan:35.1 | : |
Description
BnaC01g19740DBnaC01g19740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUU6]
Coordinates
chrLK032473:+:276982..278194
Molecular Weight (calculated)
29109.1 Da
IEP (calculated)
7.583
GRAVY (calculated)
-0.163
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVPLPAVP QSPAEGFYAI NNEFLMNGPK GFQEYKMLEN DIMFVRMDFP GVPEDGVSVT LEPSKTLVSV SAHAPKVHTH DFSHRNYLII TGLVCGCCEI
101: SGFTYHMTDG VLRLHLSKTN ILHPQRSSCN SFLGGIRFRG DDLCRCPQRL PYNRDPYHPD LTGPLLIPHP NVRQGTTMAY ESKQLESGSL YVRLDMPGVP
201: KDNFNVSVSS GRVKVTGQAP AVSHDSDGRF YSGDVAMLSA PVDVPSRPIK TIIKDGVIRL LIPSV
101: SGFTYHMTDG VLRLHLSKTN ILHPQRSSCN SFLGGIRFRG DDLCRCPQRL PYNRDPYHPD LTGPLLIPHP NVRQGTTMAY ESKQLESGSL YVRLDMPGVP
201: KDNFNVSVSS GRVKVTGQAP AVSHDSDGRF YSGDVAMLSA PVDVPSRPIK TIIKDGVIRL LIPSV
001: MVVPLRAIPS SREGFYAINN QFQANGPKGF MEFKMLENED MYVRIDFPGV PRDGVRVFLD QSKKAVCIFA DAPKEHKYDY SERNYGTSTG LVCKCCEISG
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B7R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.