CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32266	Canola	cytosol	95.11	95.11
CDY09677	Canola	extracellular	36.44	59.85
CDX90508	Canola	extracellular	36.0	57.45
AT4G16540.1	Thale cress	cytosol	49.33	47.84
CDY40538	Canola	cytosol	56.0	47.55
CDY32265	Canola	cytosol	55.56	47.17
AT2G03020.1	Thale cress	cytosol	50.67	44.71
CDX90510	Canola	cytosol	51.11	43.89
CDY09679	Canola	cytosol	47.11	42.57
CDY53640	Canola	cytosol	49.78	42.26
CDY50850	Canola	cytosol	49.33	41.89
CDY63876	Canola	cytosol	44.89	38.85
CDY09678	Canola	cytosol	42.22	34.8
CDX90513	Canola	cytosol	38.22	34.4
CDY09681	Canola	cytosol	35.11	34.35
CDY09683	Canola	cytosol	20.44	33.33
CDX90512	Canola	cytosol	35.56	32.26
CDY50905	Canola	cytosol	40.44	32.16
CDY46005	Canola	mitochondrion	23.56	31.93
CDX90509	Canola	cytosol	37.33	31.7
CDY09703	Canola	plastid	35.11	30.98
CDX77779	Canola	cytosol	28.89	25.19
CDY17724	Canola	cytosol	27.56	24.6
CDX77784	Canola	cytosol	27.11	23.74
CDX87694	Canola	cytosol	20.0	22.96
CDY67243	Canola	cytosol	17.78	22.47
CDX77721	Canola	cytosol	26.67	22.39
CDY46006	Canola	cytosol	24.89	22.31
CDX77719	Canola	cytosol	22.67	22.27
CDY43629	Canola	cytosol	18.67	22.22
CDX84467	Canola	cytosol	10.67	22.22
CDY37166	Canola	cytosol	22.22	22.03
CDY56707	Canola	cytosol	25.78	21.97
CDY41336	Canola	cytosol	25.78	21.8
CDX80270	Canola	cytosol	25.33	21.67
CDX77781	Canola	cytosol	24.89	21.62
CDY37163	Canola	mitochondrion	18.67	21.43
CDY53682	Canola	cytosol	24.89	21.21
CDY17722	Canola	cytosol	23.56	20.38
CDY37164	Canola	mitochondrion	14.67	18.13
CDY33502	Canola	cytosol	20.89	17.74
CDY33037	Canola	cytosol	25.33	16.91
CDY43630	Canola	cytosol	8.44	16.38

Protein Annotations

EnsemblPlants:CDY40537	EnsemblPlantsGene:GSBRNA2T00069854001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031	ProteinID:CDY40537
ProteinID:CDY40537.1	SUPFAM:SSF49764	UniParc:UPI0004EF0C3E	UniProt:A0A078HRW5	MapMan:35.1	:

Description

BnaC01g19750DBnaC01g19750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRW5]

Coordinates

chrLK032473:+:270366..271235

Molecular Weight (calculated)

25054.8 Da

IEP (calculated)

5.321

GRAVY (calculated)

-0.213

Length

225 amino acids

Sequence
(BLAST)

001: MAAVPEGYYE STNPFLVHGP RGFEEFKLLE SFGMYVRMDF PGVPEECVRV SLDPAKKSLA VYADAPKVHR YDLAQRKYLS VIETVCRCCV FDRFTYQMSD
101: GVLRLHLSKS NIDPSHSSCI EFKYSAFGED ISGNDMDESY ESKQLEDGNL YVRLDMPGVP KDNFTVSVAN GKVNVTGQAP ALDHDSGSRL YSSDVVILSG
201: PVDFPSHQVK TIIKNGVIRL LIPPV

Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)

001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.