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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G47590.1 CDX74755 AT2G45660.1 21798944
AT5G47590.1 CDY27368 AT2G45660.1 21798944
AT5G47590.1 CDY37054 AT2G45660.1 21798944
AT5G47590.1 CDY53886 AT2G45660.1 21798944
AT5G47590.1 CDY60689 AT2G45660.1 21798944
AT5G47590.1 CDY69077 AT2G45660.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022079.1-P Field mustard cytosol 90.48 85.07
CDY37163 Canola mitochondrion 64.02 61.73
CDX87694 Canola cytosol 59.79 57.65
CDY53682 Canola cytosol 80.42 57.58
CDX84467 Canola cytosol 29.1 50.93
CDY37164 Canola mitochondrion 48.68 50.55
CDY37166 Canola cytosol 59.26 49.34
CDX77719 Canola cytosol 57.14 47.16
CDX80270 Canola cytosol 65.08 46.77
CDX77721 Canola cytosol 65.61 46.27
CDY56707 Canola cytosol 62.96 45.08
CDY33502 Canola cytosol 62.96 44.91
CDY41336 Canola cytosol 61.38 43.61
CDY67243 Canola cytosol 39.15 41.57
CDY17724 Canola cytosol 53.44 40.08
CDX77779 Canola cytosol 54.5 39.92
CDX77784 Canola cytosol 52.38 38.52
CDX77781 Canola cytosol 52.38 38.22
CDY17722 Canola cytosol 52.38 38.08
AT5G47590.1 Thale cress cytosol 51.32 36.74
CDY33037 Canola cytosol 64.02 35.91
CDY43630 Canola cytosol 20.63 33.62
CDY09681 Canola cytosol 31.22 25.65
CDY32265 Canola cytosol 32.28 23.02
CDY50850 Canola cytosol 31.75 22.64
CDY53640 Canola cytosol 31.22 22.26
CDY40538 Canola cytosol 31.22 22.26
CDX90512 Canola cytosol 28.57 21.77
CDX90510 Canola cytosol 28.57 20.61
CDY09677 Canola extracellular 14.81 20.44
CDY63876 Canola cytosol 26.45 19.23
CDX90513 Canola cytosol 25.4 19.2
CDY09679 Canola cytosol 24.87 18.88
CDY40537 Canola cytosol 22.22 18.67
CDY32266 Canola cytosol 22.22 18.67
CDX90508 Canola extracellular 13.76 18.44
CDY09703 Canola plastid 24.87 18.43
CDY09678 Canola cytosol 26.45 18.32
CDY50905 Canola cytosol 26.45 17.67
CDY46005 Canola mitochondrion 15.34 17.47
CDX90509 Canola cytosol 24.34 17.36
CDY09683 Canola cytosol 12.17 16.67
CDY46006 Canola cytosol 17.99 13.55
Protein Annotations
EnsemblPlants:CDY43629EnsemblPlantsGene:GSBRNA2T00076968001InterPro:HSP20InterPro:HSP20-like_chaperoneInterPro:IPR008978PANTHER:PTHR11527
PANTHER:PTHR11527:SF95ProteinID:CDY43629ProteinID:CDY43629.1SUPFAM:SSF49764UniParc:UPI0004EE8EC4UniProt:A0A078I203
MapMan:35.2:::::
Description
BnaC02g32950DBnaC02g32950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I203]
Coordinates
chrLK032563:+:133982..134640
Molecular Weight (calculated)
21045.9 Da
IEP (calculated)
4.635
GRAVY (calculated)
-0.470
Length
189 amino acids
Sequence
(BLAST)
001: MEIKILENDN LYVRVDLPGV PDDGVRHRVD SVRQKVVFFS CEETLSDGDD KKNAREYAGT AGLGCDCCEI TGVDAKMKDG MLRMIVSRGQ QVYSLFPSQQ
101: RYNMDEPALN MAKAVEDHPF VVKGPKRSEN SVQRRGDGSV WVSFDLPGVC GDDILVLPNE NEVKFYGENK GVYEHDESCR IFMGAVNGA
Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)
001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.