Factsheet for Bra022079.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43629	Canola	cytosol	85.07	90.48
Bra022083.1-P	Field mustard	cytosol	63.18	67.91
Bra022080.1-P	Field mustard	cytosol	33.33	61.47
Bra022051.1-P	Field mustard	cytosol	76.12	59.3
Bra022085.2-P	Field mustard	cytosol	47.76	59.26
Bra034108.1-P	Field mustard	cytosol	68.16	58.3
Bra024976.1-P	Field mustard	cytosol	70.65	53.38
Bra024932.1-P	Field mustard	cytosol	57.71	46.03
Bra024930.1-P	Field mustard	cytosol	56.72	43.85
AT5G47590.1	Thale cress	cytosol	54.23	41.29
Bra002567.1-P	Field mustard	cytosol	63.68	33.6
Bra038484.1-P	Field mustard	cytosol	32.84	24.91
Bra040740.1-P	Field mustard	cytosol	30.35	23.92
Bra012707.1-P	Field mustard	cytosol	28.86	23.58
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	16.42	23.24
Bra012708.1-P	Field mustard	cytosol	24.88	20.0
Bra038485.1-P	Field mustard	cytosol	22.39	20.0
Bra008244.1-P	Field mustard	cytosol	25.87	18.37
Bra012705.1-P	Field mustard	cytosol	28.86	14.54

Protein Annotations

EnsemblPlants:Bra022079.1	EnsemblPlants:Bra022079.1-P	EnsemblPlantsGene:Bra022079	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	SUPFAM:SSF49764	UniParc:UPI0002546110	UniProt:M4DZY2	MapMan:35.2

Description

AT5G47590 (E=5e-056) | heat shock protein-related

Coordinates

chrA02:+:19099243..19099930

Molecular Weight (calculated)

22507.8 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.472

Length

201 amino acids

Sequence
(BLAST)

001: MEIKILQNDN LYIRVDLPGV PDDGVRHRVD SVRQKVVFFS GEETLSDGDD KKNAREYAGT AGLGCDCCEI TGVDAKMKDG VLRMIVSRVK VKDHDNKCTL
101: FLPPNTGKSG RYNMDEPALN MAKVVEDHPF VVKGPKRSEN SVQRRGDGSV WVSFDLPGVC GDDILVLPNE NEVKFYGENK EVYEHDESCR IFMGAVMEFP
201: F

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.