Factsheet for Bra034108.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41336	Canola	cytosol	97.45	86.09
Bra022083.1-P	Field mustard	cytosol	57.87	72.73
Bra022080.1-P	Field mustard	cytosol	33.62	72.48
Bra022079.1-P	Field mustard	cytosol	58.3	68.16
Bra024976.1-P	Field mustard	cytosol	76.6	67.67
Bra022085.2-P	Field mustard	cytosol	45.11	65.43
Bra022051.1-P	Field mustard	cytosol	62.55	56.98
Bra024932.1-P	Field mustard	cytosol	56.17	52.38
Bra024930.1-P	Field mustard	cytosol	56.17	50.77
AT5G47590.1	Thale cress	cytosol	56.17	50.0
Bra002567.1-P	Field mustard	cytosol	65.96	40.68
Bra040740.1-P	Field mustard	cytosol	27.23	25.1
Bra038484.1-P	Field mustard	cytosol	27.66	24.53
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	14.47	23.94
Bra038485.1-P	Field mustard	cytosol	21.28	22.22
Bra012707.1-P	Field mustard	cytosol	22.98	21.95
Bra012708.1-P	Field mustard	cytosol	22.55	21.2
Bra008244.1-P	Field mustard	cytosol	23.83	19.79
Bra012705.1-P	Field mustard	cytosol	28.09	16.54

Protein Annotations

EnsemblPlants:Bra034108.1	EnsemblPlants:Bra034108.1-P	EnsemblPlantsGene:Bra034108	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	SEG:seg	SUPFAM:SSF49764	UniParc:UPI00025441A3	UniProt:M4EZ65
MapMan:35.2	:	:	:	:	:

Description

AT5G47590 (E=1e-060) | heat shock protein-related

Coordinates

chrA01:-:27411762..27412713

Molecular Weight (calculated)

26298.1 Da

IEP (calculated)

5.568

GRAVY (calculated)

-0.441

Length

235 amino acids

Sequence
(BLAST)

001: METKILPNDD LYVRVDLPGV PDDAIRHRVD AVRQKVVFFS GEEVLGDGDN AHDVREYSGT AGLGCDCCEI TGVDAKMKDG VLRMILTRVK VKDHHDNNNN
101: KCTHFLPPNA GKSGRYDVNS LVMVEVEEHP YVVKGRKDTL ATNRTSDGCF RFSVDMPGVC SDDVFVIPNQ NEIKFYGENK EVYEHDESCR IFLGAISNRQ
201: CCSFGIPLLS HDIAWDAEFG VLKVRVSPPP RNNHN

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.