Factsheet for Bra022051.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022080.1-P	Field mustard	cytosol	36.43	86.24
CDX87694	Canola	cytosol	58.91	77.55
Bra022079.1-P	Field mustard	cytosol	59.3	76.12
Bra022083.1-P	Field mustard	cytosol	53.88	74.33
Bra022085.2-P	Field mustard	cytosol	42.64	67.9
Bra024976.1-P	Field mustard	cytosol	65.12	63.16
Bra034108.1-P	Field mustard	cytosol	56.98	62.55
Bra024932.1-P	Field mustard	cytosol	48.06	49.21
AT5G47590.1	Thale cress	cytosol	48.84	47.73
Bra024930.1-P	Field mustard	cytosol	47.67	47.31
Bra002567.1-P	Field mustard	cytosol	52.71	35.7
Bra038484.1-P	Field mustard	cytosol	27.13	26.42
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	14.34	26.06
Bra012707.1-P	Field mustard	cytosol	24.03	25.2
Bra040740.1-P	Field mustard	cytosol	24.42	24.71
Bra038485.1-P	Field mustard	cytosol	20.54	23.56
Bra012708.1-P	Field mustard	cytosol	21.32	22.0
Bra008244.1-P	Field mustard	cytosol	23.26	21.2
Bra012705.1-P	Field mustard	cytosol	25.58	16.54

Protein Annotations

EnsemblPlants:Bra022051.1	EnsemblPlants:Bra022051.1-P	EnsemblPlantsGene:Bra022051	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0002545F40	UniProt:M4DZV4
MapMan:35.2	:	:	:	:	:

Description

AT5G47590 (E=9e-025) | heat shock protein-related

Coordinates

chrA02:-:18905501..18906729

Molecular Weight (calculated)

28685.1 Da

IEP (calculated)

7.797

GRAVY (calculated)

-0.473

Length

258 amino acids

Sequence
(BLAST)

001: MAEARLLDMS RVPFIPACQM SGIHATNNLY QRYGPKGFME IKILQNDNLY VRVDLPGVPD DGVRHRVDSV RQKVVFFSGE ATLSDGDDKK NARVDAKMKD
101: GVLRMIVSRV KVKDHDNKCT HFLPPNTGKS GSYNTDEPLF KMFKAAEDHP FVVKGCKRST SRRRRGDGGG SCVSFDLPGV CSDDILVLPN ENEVKFYGEN
201: KEVYEHDDSC RIFMGAITRS SVCAPGVPLL SHDIAWDAEF GVLTVRVSPP GSNNTNRE

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.