Factsheet for Bra024932.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17724	Canola	cytosol	99.6	99.6
Bra024930.1-P	Field mustard	cytosol	63.49	61.54
Bra022083.1-P	Field mustard	cytosol	44.84	60.43
Bra022080.1-P	Field mustard	cytosol	25.4	58.72
AT5G47590.1	Thale cress	cytosol	61.51	58.71
Bra022079.1-P	Field mustard	cytosol	46.03	57.71
Bra024976.1-P	Field mustard	cytosol	59.52	56.39
Bra034108.1-P	Field mustard	cytosol	52.38	56.17
Bra022085.2-P	Field mustard	cytosol	34.52	53.7
Bra022051.1-P	Field mustard	cytosol	49.21	48.06
Bra002567.1-P	Field mustard	cytosol	48.41	32.02
Bra040740.1-P	Field mustard	cytosol	30.56	30.2
Bra038484.1-P	Field mustard	cytosol	30.95	29.43
Bra012707.1-P	Field mustard	cytosol	28.17	28.86
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	15.48	27.46
Bra038485.1-P	Field mustard	cytosol	24.21	27.11
Bra012708.1-P	Field mustard	cytosol	26.59	26.8
Bra008244.1-P	Field mustard	cytosol	26.98	24.03
Bra012705.1-P	Field mustard	cytosol	31.75	20.05

Protein Annotations

EnsemblPlants:Bra024932.1	EnsemblPlants:Bra024932.1-P	EnsemblPlantsGene:Bra024932	Gene3D:2.60.40.790	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000253FA86
UniProt:M4E826	MapMan:35.1	:	:	:	:

Description

AT5G47590 (E=2e-082) | heat shock protein-related

Coordinates

chrA06:+:24292572..24294215

Molecular Weight (calculated)

27360.4 Da

IEP (calculated)

7.566

GRAVY (calculated)

-0.391

Length

252 amino acids

Sequence
(BLAST)

001: MDSSSYSSVL ITGIYATNNQ FQKAGPKGFI HVKVLENDSL YVRVDLPGVP DDGIRHRVDA VRKKLVFFSG QTPDGNRREG VREYSGSAGL GCDCCEITGV
101: DAKMKDGVLR MIVSRVKVKD HDNKCTNTVP PNAGKSGRHL EDHPFVVKGR KGAFVGVPLP GDGLYFAVDI PGVRGDDVEV LANEHQVKFY AEVKNVYEHD
201: EGGGRVYLGC VNSRSSSSDP PPSILTHRLG YDAEFGVLKI VIAPRPNNTS SD

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.