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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G47590.1 CDX74755 AT2G45660.1 21798944
AT5G47590.1 CDY27368 AT2G45660.1 21798944
AT5G47590.1 CDY37054 AT2G45660.1 21798944
AT5G47590.1 CDY53886 AT2G45660.1 21798944
AT5G47590.1 CDY60689 AT2G45660.1 21798944
AT5G47590.1 CDY69077 AT2G45660.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024932.1-P Field mustard cytosol 99.6 99.6
CDX77779 Canola cytosol 88.89 86.82
CDX77784 Canola cytosol 63.89 62.65
CDY17722 Canola cytosol 63.89 61.92
CDX77781 Canola cytosol 63.1 61.39
CDX84467 Canola cytosol 25.4 59.26
AT5G47590.1 Thale cress cytosol 61.9 59.09
CDX77719 Canola cytosol 52.78 58.08
CDX87694 Canola cytosol 44.05 56.63
CDY37163 Canola mitochondrion 43.65 56.12
CDY37166 Canola cytosol 49.6 55.07
CDX80270 Canola cytosol 56.75 54.37
CDY53682 Canola cytosol 56.35 53.79
CDY43629 Canola cytosol 40.08 53.44
CDY56707 Canola cytosol 55.56 53.03
CDY41336 Canola cytosol 55.95 53.01
CDX77721 Canola cytosol 55.95 52.61
CDY33502 Canola cytosol 54.37 51.7
CDY67243 Canola cytosol 35.32 50.0
CDY37164 Canola mitochondrion 35.71 49.45
CDY33037 Canola cytosol 50.4 37.69
CDY43630 Canola cytosol 17.06 37.07
CDX90510 Canola cytosol 31.75 30.53
CDY09681 Canola cytosol 27.38 30.0
CDY32265 Canola cytosol 31.35 29.81
CDY50850 Canola cytosol 31.35 29.81
CDX90512 Canola cytosol 28.97 29.44
CDY53640 Canola cytosol 30.95 29.43
CDY09679 Canola cytosol 28.57 28.92
CDY40538 Canola cytosol 29.37 27.92
CDY09677 Canola extracellular 15.08 27.74
CDY32266 Canola cytosol 24.6 27.56
CDY40537 Canola cytosol 24.6 27.56
CDX90513 Canola cytosol 26.98 27.2
CDY09678 Canola cytosol 29.37 27.11
CDX90508 Canola extracellular 14.68 26.24
CDY09703 Canola plastid 26.19 25.88
CDX90509 Canola cytosol 26.98 25.66
CDY50905 Canola cytosol 27.78 24.73
CDY63876 Canola cytosol 24.21 23.46
CDY46005 Canola mitochondrion 14.68 22.29
CDY09683 Canola cytosol 11.9 21.74
CDY46006 Canola cytosol 19.05 19.12
Protein Annotations
EnsemblPlants:CDY17724EnsemblPlantsGene:GSBRNA2T00001949001Gene3D:2.60.40.790InterPro:HSP20InterPro:HSP20-like_chaperoneInterPro:IPR008978
PANTHER:PTHR11527PANTHER:PTHR11527:SF95ProteinID:CDY17724ProteinID:CDY17724.1SEG:segSUPFAM:SSF49764
UniParc:UPI0004EEDE01UniProt:A0A078FX47MapMan:35.1:::
Description
BnaA06g35430DBnaA06g35430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX47]
Coordinates
chrLK032076:+:727753..729256
Molecular Weight (calculated)
27346.4 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.392
Length
252 amino acids
Sequence
(BLAST)
001: MDSSSYSSVL ITGIYATNNQ FQKAGPKGFI HVKVLENDSL YVRVDLPGVP DDGVRHRVDA VRKKLVFFSG QTPDGNRREG VREYSGSAGL GCDCCEITGV
101: DAKMKDGVLR MIVSRVKVKD HDNKCTNTVP PNAGKSGRHL EDHPFVVKGR KGAFVGVPLP GDGLYFAVDI PGVRGDDVEV LANEHQVKFY AEVKNVYEHD
201: EGGGRVYLGC VNSRSSSSDP PPSILTHRLG YDAEFGVLKI VIAPRPNNTS SD
Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)
001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.