CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038484.1-P	Field mustard	cytosol	100.0	100.0
CDY40538	Canola	cytosol	83.4	83.4
CDY09677	Canola	extracellular	33.21	64.23
AT2G03020.1	Thale cress	cytosol	60.0	62.35
AT4G16540.1	Thale cress	cytosol	53.58	61.21
CDX90508	Canola	extracellular	32.08	60.28
CDX90510	Canola	cytosol	58.11	58.78
CDY50850	Canola	cytosol	58.11	58.11
CDY53640	Canola	cytosol	58.11	58.11
CDY09679	Canola	cytosol	54.34	57.83
CDY40537	Canola	cytosol	47.17	55.56
CDY32266	Canola	cytosol	46.79	55.11
CDY63876	Canola	cytosol	48.68	49.62
CDY09681	Canola	cytosol	37.36	43.04
CDY09678	Canola	cytosol	44.15	42.86
CDY46005	Canola	mitochondrion	25.66	40.96
CDY09683	Canola	cytosol	21.13	40.58
CDY09703	Canola	plastid	38.49	40.0
CDY50905	Canola	cytosol	42.64	39.93
CDX90513	Canola	cytosol	36.98	39.2
CDX90512	Canola	cytosol	36.6	39.11
CDX90509	Canola	cytosol	37.74	37.74
CDY37163	Canola	mitochondrion	25.28	34.18
CDY43629	Canola	cytosol	23.02	32.28
CDX77784	Canola	cytosol	30.94	31.91
CDX77779	Canola	cytosol	30.57	31.4
CDY17724	Canola	cytosol	29.81	31.35
CDY37166	Canola	cytosol	26.42	30.84
CDY53682	Canola	cytosol	30.57	30.68
CDX87694	Canola	cytosol	22.26	30.1
CDX77781	Canola	cytosol	29.06	29.73
CDX77719	Canola	cytosol	25.28	29.26
CDY41336	Canola	cytosol	29.06	28.95
CDY17722	Canola	cytosol	28.3	28.85
CDX80270	Canola	cytosol	27.92	28.14
CDY56707	Canola	cytosol	27.92	28.03
CDX77721	Canola	cytosol	27.92	27.61
CDY67243	Canola	cytosol	18.49	27.53
CDY37164	Canola	mitochondrion	18.49	26.92
CDX84467	Canola	cytosol	10.57	25.93
CDY33502	Canola	cytosol	25.28	25.28
CDY46006	Canola	cytosol	23.4	24.7
CDY33037	Canola	cytosol	27.17	21.36
CDY43630	Canola	cytosol	8.68	19.83

Protein Annotations

EnsemblPlants:CDY32265	EnsemblPlantsGene:GSBRNA2T00051714001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	InterPro:Small_heat_shock_prot_prd_pln	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031
PIRSF:PIRSF030283	ProteinID:CDY32265	ProteinID:CDY32265.1	SUPFAM:SSF49764	UniParc:UPI0002544501	UniProt:A0A078H0N3
MapMan:35.1	:	:	:	:	:

Description

BnaA01g17190DBnaA01g17190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0N3]

Coordinates

chrLK032290:-:370926..372137

Molecular Weight (calculated)

28901.8 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.114

Length

265 amino acids

Sequence
(BLAST)

001: MAAVPLPAVP QSPEGFYAIN NEFLMNGPKG FQEFKILEND IMFVRMDFPG VPEDGVSVTL DQSKTLVSVS AKAPRFHTHD LSHRNYFIIT GLGCGCCEIS
101: GFTYHMTDGV LRLHLSKTNI LHPQLPSCTS FLGGIRFKGD GDLSGCPHRL PYNRNPYHPA LTGPVLMRHP NVAEGTAMAY ESKQLENGSL YVRLDMPGVP
201: KDNFNVSVSS GRVKVTGQAP AVSHDSDGRF YSGDVAMLSA PIDVPSRPIK TIIKDGVIRL FIPSV

Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)

001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.