CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90512	Canola	cytosol	45.1	46.37
CDY09681	Canola	cytosol	41.18	45.65
CDX90513	Canola	cytosol	41.96	42.8
CDY09677	Canola	extracellular	21.96	40.88
CDY09683	Canola	cytosol	21.96	40.58
CDX90510	Canola	cytosol	40.39	39.31
CDY09679	Canola	cytosol	37.65	38.55
CDY32265	Canola	cytosol	40.0	38.49
CDX90508	Canola	extracellular	21.18	38.3
CDY40538	Canola	cytosol	39.22	37.74
CDY50850	Canola	cytosol	37.25	35.85
CDY53640	Canola	cytosol	37.25	35.85
CDY32266	Canola	cytosol	31.37	35.56
CDY40537	Canola	cytosol	30.98	35.11
CDY63876	Canola	cytosol	34.12	33.46
CDY46005	Canola	mitochondrion	20.78	31.93
CDY50905	Canola	cytosol	34.9	31.45
CDY09678	Canola	cytosol	32.94	30.77
CDX90509	Canola	cytosol	30.59	29.43
CDX84467	Canola	cytosol	12.16	28.7
CDX77779	Canola	cytosol	28.24	27.91
CDY53682	Canola	cytosol	27.84	26.89
CDY37166	Canola	cytosol	23.92	26.87
CDX77784	Canola	cytosol	27.06	26.85
CDY17724	Canola	cytosol	25.88	26.19
CDX87694	Canola	cytosol	20.0	26.02
CDY43629	Canola	cytosol	18.43	24.87
CDY17722	Canola	cytosol	25.1	24.62
CDX77719	Canola	cytosol	21.96	24.45
CDY41336	Canola	cytosol	25.49	24.44
CDX77781	Canola	cytosol	24.71	24.32
CDX80270	Canola	cytosol	24.71	23.95
CDX77721	Canola	cytosol	25.1	23.88
CDY56707	Canola	cytosol	24.71	23.86
CDY37163	Canola	mitochondrion	18.04	23.47
CDY43630	Canola	cytosol	10.59	23.28
CDY67243	Canola	cytosol	15.69	22.47
CDY33502	Canola	cytosol	21.18	20.38
CDY37164	Canola	mitochondrion	14.51	20.33
CDY46006	Canola	cytosol	19.61	19.92
CDY33037	Canola	cytosol	21.96	16.62

Protein Annotations

EnsemblPlants:CDY09703	EnsemblPlantsGene:GSBRNA2T00031373001	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:IPR002068	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	PFAM:PF00011	ProteinID:CDY09703	ProteinID:CDY09703.1	UniParc:UPI0004EE86D4	UniProt:A0A078FCE0
MapMan:35.1	:	:	:	:	:

Description

BnaC07g33580DBnaC07g33580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCE0]

Coordinates

chrLK031998:-:518226..519784

Molecular Weight (calculated)

27811.8 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.280

Length

255 amino acids

Sequence
(BLAST)

001: MVIILCANPF PHSSQGFYAT NNPFQTSGPK GRIESKMIGN NRIFMRIDLP GVEQGNVTVT IDDSKRGVLI KAEEQSRNKN VSSLRSYETH VTLGYHCCEI
101: STIDNPQVTD GVLRLFISTT PLNIYGVPCS ADEDIHGRLV LDEPDVYGNI CSCGADPNMA YEYGTLPDGS AYLRLDMPGV PKDDFTTDVV DKGSVKVTGH
201: APAVSHDSSG RSYSADAGML CDPGVRISYL DDELERYAEN GVMRLIIRDP SSLIP

Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)

001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.