CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67243	Canola	cytosol	60.71	66.85
CDY43629	Canola	cytosol	61.73	64.02
CDY53682	Canola	cytosol	79.59	59.09
CDY37166	Canola	cytosol	67.35	58.15
CDX77719	Canola	cytosol	64.8	55.46
CDX87694	Canola	cytosol	51.53	51.53
CDX80270	Canola	cytosol	68.88	51.33
CDX77721	Canola	cytosol	68.88	50.37
CDY56707	Canola	cytosol	66.84	49.62
CDY41336	Canola	cytosol	66.33	48.87
CDX77779	Canola	cytosol	60.2	45.74
CDY37164	Canola	mitochondrion	42.35	45.6
CDY33502	Canola	cytosol	60.2	44.53
CDX77784	Canola	cytosol	58.16	44.36
CDY17724	Canola	cytosol	56.12	43.65
CDY17722	Canola	cytosol	56.63	42.69
CDX77781	Canola	cytosol	56.12	42.47
AT5G47590.1	Thale cress	cytosol	56.63	42.05
CDY33037	Canola	cytosol	67.86	39.47
CDX84467	Canola	cytosol	17.86	32.41
CDY32265	Canola	cytosol	34.18	25.28
CDY09681	Canola	cytosol	29.59	25.22
CDY50850	Canola	cytosol	32.14	23.77
CDY53640	Canola	cytosol	31.63	23.4
CDY40538	Canola	cytosol	31.63	23.4
CDX90510	Canola	cytosol	29.08	21.76
CDY43630	Canola	cytosol	12.76	21.55
CDX90512	Canola	cytosol	27.04	21.37
CDY09679	Canola	cytosol	25.51	20.08
CDY09678	Canola	cytosol	27.55	19.78
CDX90513	Canola	cytosol	24.49	19.2
CDY50905	Canola	cytosol	27.04	18.73
CDY40537	Canola	cytosol	21.43	18.67
CDY32266	Canola	cytosol	21.43	18.67
CDX90509	Canola	cytosol	25.0	18.49
CDY46006	Canola	cytosol	23.47	18.33
CDY09703	Canola	plastid	23.47	18.04
CDY63876	Canola	cytosol	22.96	17.31
CDY09677	Canola	extracellular	9.18	13.14
CDX90508	Canola	extracellular	9.18	12.77
CDY46005	Canola	mitochondrion	9.69	11.45
CDY09683	Canola	cytosol	4.59	6.52

Protein Annotations

EnsemblPlants:CDY37163	EnsemblPlantsGene:GSBRNA2T00063426001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	ProteinID:CDY37163	ProteinID:CDY37163.1	SUPFAM:SSF49764	UniParc:UPI0004EF2497	UniProt:A0A078HJY7
MapMan:35.2	:	:	:	:	:

Description

BnaA02g24820DBnaA02g24820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJY7]

Coordinates

chrLK032393:+:192272..193212

Molecular Weight (calculated)

21955.7 Da

IEP (calculated)

8.120

GRAVY (calculated)

-0.283

Length

196 amino acids

Sequence
(BLAST)

001: MAGARLLDMS RVPFIPGRIH ATNNEFQRYG PKGFMEIKIL QNDNLYVRVD LPGVPDDGVR HRVDSVRQKV VFFSGEETLS DGDDKKNARE YAGTAGLGCD
101: CCEITGVDAK MKDGVLRMIV SRVKVKDHDN KCTLFLPPNT GKSGRYNMDE PALNMAKVVE DHPFVVKGPK RSENSVFVVM IYCCRIFMGA VMEFPF

Best Arabidopsis Sequence Match ( AT5G47590.2 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGSTHSS SLKSQSLLLH HLLLIQYSLF FIKVNPEYAW RIIRVWCLVA REH

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.