CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17722	Canola	cytosol	85.21	84.23
CDX77781	Canola	cytosol	84.44	83.78
CDY17724	Canola	cytosol	62.65	63.89
CDX77779	Canola	cytosol	63.03	62.79
AT5G47590.1	Thale cress	cytosol	61.48	59.85
CDX77719	Canola	cytosol	53.31	59.83
CDY37163	Canola	mitochondrion	44.36	58.16
CDX87694	Canola	cytosol	43.58	57.14
CDX80270	Canola	cytosol	57.98	56.65
CDY56707	Canola	cytosol	57.59	56.06
CDY41336	Canola	cytosol	57.2	55.26
CDY53682	Canola	cytosol	56.42	54.92
CDX77721	Canola	cytosol	56.81	54.48
CDY37166	Canola	cytosol	47.47	53.74
CDX84467	Canola	cytosol	22.18	52.78
CDY33502	Canola	cytosol	54.09	52.45
CDY43629	Canola	cytosol	38.52	52.38
CDY67243	Canola	cytosol	35.8	51.69
CDY37164	Canola	mitochondrion	33.85	47.8
CDY33037	Canola	cytosol	55.25	42.14
CDY43630	Canola	cytosol	16.73	37.07
CDY09681	Canola	cytosol	28.4	31.74
CDY32265	Canola	cytosol	31.91	30.94
CDY50850	Canola	cytosol	31.91	30.94
CDY53640	Canola	cytosol	31.52	30.57
CDX90510	Canola	cytosol	31.13	30.53
CDX90513	Canola	cytosol	28.4	29.2
CDY09679	Canola	cytosol	28.02	28.92
CDY40538	Canola	cytosol	29.18	28.3
CDY40537	Canola	cytosol	23.74	27.11
CDY09703	Canola	plastid	26.85	27.06
CDX90512	Canola	cytosol	26.07	27.02
CDY09677	Canola	extracellular	14.4	27.01
CDX90508	Canola	extracellular	14.79	26.95
CDY50905	Canola	cytosol	29.57	26.86
CDY32266	Canola	cytosol	23.35	26.67
CDY09678	Canola	cytosol	27.63	26.01
CDX90509	Canola	cytosol	25.68	24.91
CDY46005	Canola	mitochondrion	15.95	24.7
CDY09683	Canola	cytosol	13.23	24.64
CDY63876	Canola	cytosol	24.9	24.62
CDY46006	Canola	cytosol	20.62	21.12

Protein Annotations

EnsemblPlants:CDX77784	EnsemblPlantsGene:GSBRNA2T00128823001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	InterPro:Small_heat_shock_prot_prd_pln
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PIRSF:PIRSF030283	ProteinID:CDX77784	ProteinID:CDX77784.1	SUPFAM:SSF49764
UniParc:UPI0004EE6474	MapMan:35.1	:	:	:	:

Description

BnaC07g20380D

Coordinates

chrLK031812:+:1775091..1776056

Molecular Weight (calculated)

28008.1 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.281

Length

257 amino acids

Sequence
(BLAST)

001: MVGFNCIDLS ALPTDTEGFY ATNNQFQKRG PKGFIQVKVL DDDKLYVRVD LPGVPDDAVH HRIDAVRQKV VFFSAVTFDD GYEKQGVREY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILS RVKVKKDHDN KCTNTVPPFT GKSGRRVEEH PFVVKGRKRA YVGEPLDDGG VYFAVDVPGV GNGDVEVFAN ESEINFTAEV
201: KSVFEHDESG RLYLGSVDTS WSTPAVSLLS HAITGAVNFG VLKVLITPRP NSGGNNE

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.