CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84467	Canola	cytosol	35.98	87.96
CDY43629	Canola	cytosol	57.58	80.42
CDY37166	Canola	cytosol	68.56	79.74
CDY37163	Canola	mitochondrion	59.09	79.59
CDX87694	Canola	cytosol	58.33	78.57
CDY67243	Canola	cytosol	50.0	74.16
CDX80270	Canola	cytosol	70.83	71.1
CDX77721	Canola	cytosol	71.97	70.9
CDY56707	Canola	cytosol	70.45	70.45
CDY41336	Canola	cytosol	70.08	69.55
CDX77719	Canola	cytosol	59.85	69.0
CDY43630	Canola	cytosol	29.92	68.1
CDY37164	Canola	mitochondrion	45.08	65.38
CDY33502	Canola	cytosol	65.15	64.91
CDX77779	Canola	cytosol	56.82	58.14
CDX77784	Canola	cytosol	54.92	56.42
CDY17724	Canola	cytosol	53.79	56.35
CDX77781	Canola	cytosol	53.79	54.83
CDY17722	Canola	cytosol	53.41	54.23
AT5G47590.1	Thale cress	cytosol	52.65	52.65
CDY33037	Canola	cytosol	63.26	49.55
CDY09681	Canola	cytosol	26.89	30.87
CDY32265	Canola	cytosol	30.68	30.57
CDY40538	Canola	cytosol	28.79	28.68
CDX90512	Canola	cytosol	26.52	28.23
CDX90510	Canola	cytosol	27.65	27.86
CDY09703	Canola	plastid	26.89	27.84
CDY53640	Canola	cytosol	27.65	27.55
CDY50850	Canola	cytosol	27.65	27.55
CDY09677	Canola	extracellular	14.02	27.01
CDY09679	Canola	cytosol	25.0	26.51
CDX90513	Canola	cytosol	24.62	26.0
CDY09678	Canola	cytosol	26.14	25.27
CDY40537	Canola	cytosol	21.21	24.89
CDX90508	Canola	extracellular	13.26	24.82
CDX90509	Canola	cytosol	24.62	24.53
CDY32266	Canola	cytosol	20.83	24.44
CDY50905	Canola	cytosol	25.76	24.03
CDY63876	Canola	cytosol	23.11	23.46
CDY09683	Canola	cytosol	12.12	23.19
CDY46005	Canola	mitochondrion	13.26	21.08
CDY46006	Canola	cytosol	18.94	19.92

Protein Annotations

EnsemblPlants:CDY53682	EnsemblPlantsGene:GSBRNA2T00011234001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	ProteinID:CDY53682	ProteinID:CDY53682.1	SUPFAM:SSF49764	UniParc:UPI0004EDCCFC	UniProt:A0A078IUJ8
MapMan:35.2	:	:	:	:	:

Description

BnaC02g48030DBnaC02g48030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUJ8]

Coordinates

chrLK033227:+:52846..53922

Molecular Weight (calculated)

29470.1 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.458

Length

264 amino acids

Sequence
(BLAST)

001: MAQTRVLDMS RVPFIPGRIH ATNNEYQRYG PKGFMQIKIL ENDNLYVRVD LPGVPDDGVR HRVDSVRQKV VFFSGEETLS DKKNAREYAG TAGLGCDCCE
101: ITGVDAKMKD GVLRMIVSRV KVKDHDNKCT HFLPPNTGKS GRYNMDDMNI MAEVEDHPFV VKGPKRSDHY STQRRGDGSV CVSFDLPGVC SDDILVLPNE
201: NEVKFYGENK EVYEHDESCR IFMGALNGAY LCAPGVPLLS HHIAWDAEFG VLKVRISPPG SNSD

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.