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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G47590.1 CDX74755 AT2G45660.1 21798944
AT5G47590.1 CDY27368 AT2G45660.1 21798944
AT5G47590.1 CDY37054 AT2G45660.1 21798944
AT5G47590.1 CDY53886 AT2G45660.1 21798944
AT5G47590.1 CDY60689 AT2G45660.1 21798944
AT5G47590.1 CDY69077 AT2G45660.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024976.1-P Field mustard cytosol 86.42 86.09
CDX77719 Canola cytosol 70.57 81.66
CDX84467 Canola cytosol 29.81 73.15
CDX80270 Canola cytosol 72.08 72.62
CDX77721 Canola cytosol 70.94 70.15
CDY56707 Canola cytosol 69.06 69.32
CDY41336 Canola cytosol 69.43 69.17
CDX87694 Canola cytosol 49.81 67.35
CDY53682 Canola cytosol 64.91 65.15
CDY43629 Canola cytosol 44.91 62.96
CDY37164 Canola mitochondrion 41.89 60.99
CDY37166 Canola cytosol 51.7 60.35
CDY37163 Canola mitochondrion 44.53 60.2
CDY67243 Canola cytosol 36.6 54.49
CDX77781 Canola cytosol 53.21 54.44
CDY17724 Canola cytosol 51.7 54.37
CDX77784 Canola cytosol 52.45 54.09
CDX77779 Canola cytosol 52.45 53.88
CDY17722 Canola cytosol 52.83 53.85
CDY43630 Canola cytosol 23.02 52.59
AT5G47590.1 Thale cress cytosol 51.7 51.89
CDY33037 Canola cytosol 63.4 49.85
CDX90510 Canola cytosol 25.28 25.57
CDY32265 Canola cytosol 25.28 25.28
CDY09677 Canola extracellular 12.83 24.82
CDY09681 Canola cytosol 21.51 24.78
CDY53640 Canola cytosol 24.53 24.53
CDY50850 Canola cytosol 24.53 24.53
CDY09679 Canola cytosol 22.64 24.1
CDX90508 Canola extracellular 12.45 23.4
CDY40538 Canola cytosol 23.4 23.4
CDY09678 Canola cytosol 23.02 22.34
CDX90509 Canola cytosol 22.26 22.26
CDX90512 Canola cytosol 20.0 21.37
CDY32266 Canola cytosol 18.11 21.33
CDY09703 Canola plastid 20.38 21.18
CDY46005 Canola mitochondrion 13.21 21.08
CDY40537 Canola cytosol 17.74 20.89
CDY50905 Canola cytosol 22.26 20.85
CDX90513 Canola cytosol 19.62 20.8
CDY63876 Canola cytosol 19.62 20.0
CDY09683 Canola cytosol 9.81 18.84
CDY46006 Canola cytosol 15.09 15.94
Protein Annotations
EnsemblPlants:CDY33502EnsemblPlantsGene:GSBRNA2T00054752001Gene3D:2.60.40.790InterPro:HSP20InterPro:HSP20-like_chaperoneInterPro:IPR008978
PANTHER:PTHR11527PANTHER:PTHR11527:SF95ProteinID:CDY33502ProteinID:CDY33502.1SUPFAM:SSF49764UniParc:UPI0004EDF38D
UniProt:A0A078H7T2MapMan:35.2::::
Description
BnaA06g35710DBnaA06g35710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7T2]
Coordinates
chrLK032315:+:303798..305747
Molecular Weight (calculated)
29507.6 Da
IEP (calculated)
5.189
GRAVY (calculated)
-0.456
Length
265 amino acids
Sequence
(BLAST)
001: MCLCDVDFDS LHPWSAPRDQ QSVPEIRSKG FHGNQSPHDD NLYVRVDLPG VPDDAIRYRV DAVRQKVVFF SGEETLRAGD KVDDVREYSG TAGLGCDCCE
101: ITGVDAKMKD GVLRMILSRV KVKDHDNKCT HFLPPNTGKS GRYDIGDSAV DMVEVEDHPF VVKGRKGTFT SARTSDGCYH FSVDLPGVSS DDIFVLPNEN
201: EFKFIAENKS VYEHDESCRI FIGAVNKRTC CSHGIPLLDH NIAWDAEFGV LKVRVSPPPL NNNDQ
Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)
001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.