Factsheet for Bra024976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77719	Canola	cytosol	81.95	95.2
CDY33502	Canola	cytosol	86.09	86.42
Bra034108.1-P	Field mustard	cytosol	67.67	76.6
Bra022080.1-P	Field mustard	cytosol	30.08	73.39
Bra022083.1-P	Field mustard	cytosol	51.13	72.73
Bra022079.1-P	Field mustard	cytosol	53.38	70.65
Bra022085.2-P	Field mustard	cytosol	40.23	66.05
Bra022051.1-P	Field mustard	cytosol	63.16	65.12
Bra024932.1-P	Field mustard	cytosol	56.39	59.52
AT5G47590.1	Thale cress	cytosol	57.89	58.33
Bra024930.1-P	Field mustard	cytosol	56.39	57.69
Bra002567.1-P	Field mustard	cytosol	68.42	47.77
Bra040740.1-P	Field mustard	cytosol	27.44	28.63
Bra038484.1-P	Field mustard	cytosol	28.2	28.3
Bra038485.1-P	Field mustard	cytosol	21.8	25.78
Bra012707.1-P	Field mustard	cytosol	23.68	25.61
Bra012708.1-P	Field mustard	cytosol	23.68	25.2
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	13.16	24.65
Bra008244.1-P	Field mustard	cytosol	25.19	23.67
Bra012705.1-P	Field mustard	cytosol	28.2	18.8

Protein Annotations

EnsemblPlants:Bra024976.1	EnsemblPlants:Bra024976.1-P	EnsemblPlantsGene:Bra024976	Gene3D:2.60.40.790	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	SUPFAM:SSF49764	UniParc:UPI000253FB01	UniProt:M4E870
MapMan:35.2	:	:	:	:	:

Description

AT5G47590 (E=5e-078) | heat shock protein-related

Coordinates

chrA06:-:24498377..24499647

Molecular Weight (calculated)

29751.4 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.348

Length

266 amino acids

Sequence
(BLAST)

001: MASVIDLSRI PYIPGRLHAT NNQFQRYGPK GFMEIKVLHN DNLYVRVDLP GVPDDAIRYR VDAVRQKVVF FSGEETLRAG DKVDDVREYS GTAGLGCDCC
101: EITGVEAKMK DGVLRMILSR VKVKDHDNKC THFLPPNTGK SGRYDIGDSA IDMIEVEDHP FVVKGRKGTF TSARTSDGCY HFSVDLPGVS SDDIFVLPNE
201: NEFKFIAENK IVYEHDESCR IFIGAVNKRT CCSHGIPLLD HNIAWDAEFG VLKVRVSPPP LNNNDQ

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.