CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024976.1-P	Field mustard	cytosol	95.2	81.95
CDY33502	Canola	cytosol	81.66	70.57
CDX80270	Canola	cytosol	79.48	69.2
CDX77721	Canola	cytosol	79.04	67.54
CDY56707	Canola	cytosol	76.42	66.29
CDY41336	Canola	cytosol	75.98	65.41
CDY37163	Canola	mitochondrion	55.46	64.8
CDY53682	Canola	cytosol	69.0	59.85
CDY67243	Canola	cytosol	44.98	57.87
CDY37166	Canola	cytosol	56.77	57.27
CDY43629	Canola	cytosol	47.16	57.14
CDX87694	Canola	cytosol	48.03	56.12
CDX77781	Canola	cytosol	61.14	54.05
CDX77784	Canola	cytosol	59.83	53.31
CDY37164	Canola	mitochondrion	42.36	53.3
CDY17722	Canola	cytosol	60.26	53.08
CDY17724	Canola	cytosol	58.08	52.78
CDX77779	Canola	cytosol	58.95	52.33
CDY33037	Canola	cytosol	75.98	51.63
AT5G47590.1	Thale cress	cytosol	58.08	50.38
CDX84467	Canola	cytosol	23.14	49.07
CDY43630	Canola	cytosol	16.16	31.9
CDY09681	Canola	cytosol	27.95	27.83
CDY53640	Canola	cytosol	30.57	26.42
CDY50850	Canola	cytosol	30.57	26.42
CDY32265	Canola	cytosol	29.26	25.28
CDX90510	Canola	cytosol	28.38	24.81
CDX90513	Canola	cytosol	26.2	24.0
CDY40538	Canola	cytosol	27.07	23.4
CDY09679	Canola	cytosol	25.33	23.29
CDY32266	Canola	cytosol	22.71	23.11
CDX90509	Canola	cytosol	26.64	23.02
CDY09678	Canola	cytosol	27.07	22.71
CDY40537	Canola	cytosol	22.27	22.67
CDY50905	Canola	cytosol	27.95	22.61
CDX90512	Canola	cytosol	24.45	22.58
CDY09703	Canola	plastid	24.45	21.96
CDY63876	Canola	cytosol	22.71	20.0
CDY09677	Canola	extracellular	11.79	19.71
CDY46006	Canola	cytosol	20.96	19.12
CDX90508	Canola	extracellular	11.35	18.44
CDY46005	Canola	mitochondrion	12.23	16.87
CDY09683	Canola	cytosol	9.17	15.22

Protein Annotations

EnsemblPlants:CDX77719	EnsemblPlantsGene:GSBRNA2T00128723001	Gene3D:2.60.40.790	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	ProteinID:CDX77719	ProteinID:CDX77719.1	SUPFAM:SSF49764	UniParc:UPI0004EEB424
MapMan:35.2	:	:	:	:	:

Description

BnaC07g19730D

Coordinates

chrLK031812:+:1281747..1282960

Molecular Weight (calculated)

25227.0 Da

IEP (calculated)

6.357

GRAVY (calculated)

-0.399

Length

229 amino acids

Sequence
(BLAST)

001: MASVIDLSSI PYIPGRLHAT NNQFQRYGPK GFMEIKVLHN DNLYVRVDLP GVPDDAIRYR VDAVRQKVVF FSGEETPGAG DKVDDVREYS GTAGLGCDCC
101: EITGVEAKMK DGVLRMILSR VKVKDHDKKC TNTLPPNSGK SGRYDIGNSA IDMVEVEDHP FVVKGRKGTF TSARTSDGCY HLSVDLPGVS SDDIFVLPNE
201: NEFKFIAENK SFGVLKVRVS PPPLNNNDQ

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.