CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09678	Canola	cytosol	73.21	71.06
AT4G16550.1	Thale cress	cytosol	53.58	53.18
CDY50905	Canola	cytosol	45.28	42.4
CDX90510	Canola	cytosol	40.75	41.22
CDY09679	Canola	cytosol	38.49	40.96
CDY53640	Canola	cytosol	38.49	38.49
CDY50850	Canola	cytosol	38.49	38.49
CDY32266	Canola	cytosol	32.08	37.78
CDY32265	Canola	cytosol	37.74	37.74
CDY40537	Canola	cytosol	31.7	37.33
CDY09681	Canola	cytosol	31.7	36.52
CDY46005	Canola	mitochondrion	22.64	36.14
CDY40538	Canola	cytosol	35.85	35.85
CDY63876	Canola	cytosol	33.21	33.85
CDX90513	Canola	cytosol	31.7	33.6
CDX90512	Canola	cytosol	29.43	31.45
CDY46006	Canola	cytosol	29.06	30.68
CDY09703	Canola	plastid	29.43	30.59
CDY09677	Canola	extracellular	15.47	29.93
CDX90508	Canola	extracellular	15.47	29.08
CDY09683	Canola	cytosol	15.09	28.99
CDX77721	Canola	cytosol	27.92	27.61
CDY17724	Canola	cytosol	25.66	26.98
CDX77719	Canola	cytosol	23.02	26.64
CDY41336	Canola	cytosol	26.04	25.94
AT4G16560.1	Thale cress	cytosol	52.08	25.94
CDY56707	Canola	cytosol	25.66	25.76
CDX77784	Canola	cytosol	24.91	25.68
CDX77779	Canola	cytosol	24.91	25.58
CDX77781	Canola	cytosol	24.91	25.48
CDX80270	Canola	cytosol	25.28	25.48
CDY37163	Canola	mitochondrion	18.49	25.0
CDY53682	Canola	cytosol	24.53	24.62
CDY17722	Canola	cytosol	24.15	24.62
CDY43629	Canola	cytosol	17.36	24.34
CDY67243	Canola	cytosol	16.23	24.16
CDX87694	Canola	cytosol	17.74	23.98
CDY37166	Canola	cytosol	19.62	22.91
CDY33502	Canola	cytosol	22.26	22.26
CDY37164	Canola	mitochondrion	13.58	19.78
CDX84467	Canola	cytosol	7.92	19.44
CDY33037	Canola	cytosol	24.15	18.99
CDY43630	Canola	cytosol	6.79	15.52

Protein Annotations

EnsemblPlants:CDX90509	EnsemblPlantsGene:GSBRNA2T00151134001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	ProteinID:CDX90509	ProteinID:CDX90509.1	SUPFAM:SSF49764	UniParc:UPI0004EE1374	MapMan:35.1

Description

BnaA03g42720D

Coordinates

chrLK031863:+:616766..622978

Molecular Weight (calculated)

29476.2 Da

IEP (calculated)

7.957

GRAVY (calculated)

-0.326

Length

265 amino acids

Sequence
(BLAST)

001: MPVMNIGPVP QSHDGFYARN NPYQVNGPKG FTEFKLMEEN EDLYARFDFP GVTKESLRIL VEPLKKAVFV FGDAPKEFRH DSSHRKYGTV TGLVCDCCEI
101: SNIQCFVGDG VVRLILSKKK INLHVPFSSR IINGYNPEAH LRGHNGHNAE ENIIRYLSQQ AFTGPITLPH PSVLEGSTSA YESKHLPNGG LFLRIDMPGV
201: PNDRFTMTVE SDGGITVIGR APPAMHDSSG QNVSQMGSRR VFNSDALRSH KWKYDPCSLL LVVFA

Best Arabidopsis Sequence Match ( AT4G16550.1 )
(BLAST)

001: MSIPHIAPVP HPRDGYYATN NPYQVNGPKG FTEFKYLEET HDLFVRLDFP GIQKESVIIL LEPSKKAVIV TGEAPKESKH DSSHRKYGTA TGLICDCCEI
101: SNIQCFVGDG VVRLILSKQK INLRVPIFCS FGGARMPTDA SPNIIRGYNP EVAGGHPLAH LRGLNPEGCR GTDPFDPAFT GPTIRPHPSV LEGSTSAYET
201: KQLSNGGLYL RIDMPGVPSD GFIVAVDGNG VVTIMGRAPA TMHDSSGRSY VCKVAIVPRG YAGVGSR

Arabidopsis Description

HSP20-like chaperone [Source:TAIR;Acc:AT4G16550]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.