Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53640 | Canola | cytosol | 97.74 | 97.74 |
| Bra040740.1-P | Field mustard | cytosol | 92.45 | 96.08 |
| AT4G16545.1 | Thale cress | cytosol | 65.28 | 66.03 |
| CDX90510 | Canola | cytosol | 63.77 | 64.5 |
| CDY09679 | Canola | cytosol | 58.49 | 62.25 |
| CDY32265 | Canola | cytosol | 58.11 | 58.11 |
| CDY09677 | Canola | extracellular | 29.43 | 56.93 |
| CDY40538 | Canola | cytosol | 56.6 | 56.6 |
| CDX90508 | Canola | extracellular | 29.43 | 55.32 |
| CDY40537 | Canola | cytosol | 41.89 | 49.33 |
| CDY32266 | Canola | cytosol | 41.89 | 49.33 |
| CDY63876 | Canola | cytosol | 47.55 | 48.46 |
| CDY09681 | Canola | cytosol | 40.0 | 46.09 |
| CDY09678 | Canola | cytosol | 45.28 | 43.96 |
| CDX90512 | Canola | cytosol | 37.74 | 40.32 |
| CDX90513 | Canola | cytosol | 37.74 | 40.0 |
| CDY09683 | Canola | cytosol | 20.38 | 39.13 |
| CDX90509 | Canola | cytosol | 38.49 | 38.49 |
| CDY50905 | Canola | cytosol | 40.38 | 37.81 |
| CDY09703 | Canola | plastid | 35.85 | 37.25 |
| CDY46005 | Canola | mitochondrion | 23.02 | 36.75 |
| CDX77779 | Canola | cytosol | 31.32 | 32.17 |
| CDY37163 | Canola | mitochondrion | 23.77 | 32.14 |
| CDX77784 | Canola | cytosol | 30.94 | 31.91 |
| CDY43629 | Canola | cytosol | 22.64 | 31.75 |
| CDY17724 | Canola | cytosol | 29.81 | 31.35 |
| CDX77719 | Canola | cytosol | 26.42 | 30.57 |
| CDX77781 | Canola | cytosol | 28.68 | 29.34 |
| CDY17722 | Canola | cytosol | 28.68 | 29.23 |
| CDY41336 | Canola | cytosol | 28.68 | 28.57 |
| CDX80270 | Canola | cytosol | 27.92 | 28.14 |
| CDY56707 | Canola | cytosol | 27.92 | 28.03 |
| CDY37166 | Canola | cytosol | 23.77 | 27.75 |
| CDY53682 | Canola | cytosol | 27.55 | 27.65 |
| CDX77721 | Canola | cytosol | 27.92 | 27.61 |
| CDX87694 | Canola | cytosol | 20.38 | 27.55 |
| CDY67243 | Canola | cytosol | 16.98 | 25.28 |
| CDY33502 | Canola | cytosol | 24.53 | 24.53 |
| CDY37164 | Canola | mitochondrion | 16.23 | 23.63 |
| CDY46006 | Canola | cytosol | 21.51 | 22.71 |
| CDY33037 | Canola | cytosol | 28.3 | 22.26 |
| CDX84467 | Canola | cytosol | 8.68 | 21.3 |
| CDY43630 | Canola | cytosol | 7.92 | 18.1 |
Protein Annotations
| EnsemblPlants:CDY50850 | EnsemblPlantsGene:GSBRNA2T00097593001 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | InterPro:Small_heat_shock_prot_prd_pln | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF95 | PFscan:PS01031 | PIRSF:PIRSF030283 |
| ProteinID:CDY50850 | ProteinID:CDY50850.1 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI0004EDF91D | UniProt:A0A078III7 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g47960DBnaC08g47960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078III7]
Coordinates
chrLK032944:+:79315..80636
Molecular Weight (calculated)
29034.2 Da
IEP (calculated)
8.001
GRAVY (calculated)
-0.093
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVPLSAIPP SREDGFYAIN NQFLANGPKG FQELKTLEND DMFIRVDFPG VPEDAMKVVV DDTKKAVTVF ALAPKEHKHD SSPRNYIYTT GLVCKCCEIS
101: AVAAHMSDGV LRLLLSKTQI ATQRPPFLVV PDSEQVVVKD HAWTGSHKVT YGTDPHADPV LTGRVLQPHP WVKQGSLMAY ESKQLQNGCL YVRVDMPGVP
201: KERFTVSVKS GMVMVTGDAP AVSHDSGGRF YSGEVAMLSN PIDIPIRQIK IISKNGIIRL IIPPA
101: AVAAHMSDGV LRLLLSKTQI ATQRPPFLVV PDSEQVVVKD HAWTGSHKVT YGTDPHADPV LTGRVLQPHP WVKQGSLMAY ESKQLQNGCL YVRVDMPGVP
201: KERFTVSVKS GMVMVTGDAP AVSHDSGGRF YSGEVAMLSN PIDIPIRQIK IISKNGIIRL IIPPA
001: MVVPLRAIPS SREGFYAINN QFQANGPKGF MEFKMLENED MYVRIDFPGV PRDGVRVFLD QSKKAVCIFA DAPKEHKYDY SERNYGTSTG LVCKCCEISG
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B7R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.