Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90510 | Canola | cytosol | 66.79 | 66.79 |
| CDY09679 | Canola | cytosol | 62.98 | 66.27 |
| CDY53640 | Canola | cytosol | 66.41 | 65.66 |
| CDY50850 | Canola | cytosol | 66.03 | 65.28 |
| Bra040740.1-P | Field mustard | cytosol | 62.6 | 64.31 |
| AT2G03020.1 | Thale cress | cytosol | 62.21 | 63.92 |
| AT4G16540.1 | Thale cress | cytosol | 54.58 | 61.64 |
| AT4G16555.1 | Thale cress | cytosol | 35.11 | 52.87 |
| AT4G16550.1 | Thale cress | cytosol | 43.51 | 42.7 |
| Bra012705.1-P | Field mustard | cytosol | 64.89 | 42.61 |
| AT5G47590.1 | Thale cress | cytosol | 32.44 | 32.2 |
| AT4G16560.1 | Thale cress | cytosol | 46.95 | 23.12 |
Protein Annotations
| ArrayExpress:AT4G16545 | EnsemblPlants:AT4G16545.1 | EnsemblPlantsGene:AT4G16545 | EntrezGene:28720135 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom |
| InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | InterPro:Small_heat_shock_prot_prd_pln | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF95 | PFscan:PS01031 | PIRSF:PIRSF030283 | ProteinID:ANM67632.1 | ProteinID:OAP00027.1 | RefSeq:NP_001329450.1 |
| SUPFAM:SSF49764 | UniParc:UPI0007E02970 | UniProt:A0A178V119 | UniProt:A0A1P8B7R1 | MapMan:35.1 | : |
Description
Heat shock protein HSP20/alpha crystallin family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B7R1]
Coordinates
chr4:-:9318319..9319814
Molecular Weight (calculated)
29090.2 Da
IEP (calculated)
8.767
GRAVY (calculated)
-0.259
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVPLRAIPS SREGFYAINN QFQANGPKGF MEFKMLENED MYVRIDFPGV PRDGVRVFLD QSKKAVCIFA DAPKEHKYDY SERNYGTSTG LVCKCCEISG
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.