Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 2
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G16545.1 | Thale cress | cytosol | 52.87 | 35.11 |
| AT4G16540.1 | Thale cress | cytosol | 39.66 | 29.74 |
| AT2G03020.1 | Thale cress | cytosol | 41.38 | 28.24 |
| AT4G16550.1 | Thale cress | cytosol | 33.91 | 22.1 |
| CDY46006 | Canola | cytosol | 29.89 | 20.72 |
| AT5G47590.1 | Thale cress | cytosol | 30.46 | 20.08 |
| AT4G16560.1 | Thale cress | cytosol | 32.18 | 10.53 |
Protein Annotations
| ArrayExpress:AT4G16555 | EnsemblPlants:AT4G16555.1 | EnsemblPlantsGene:AT4G16555 | EntrezGene:28720136 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 |
| ProteinID:ANM66584.1 | RefSeq:NP_001328470.1 | SUPFAM:SSF49764 | UniParc:UPI00084908A3 | UniProt:A0A1P8B4R6 | MapMan:35.1 |
Description
HSP20-like chaperone [Source:UniProtKB/TrEMBL;Acc:A0A1P8B4R6]
Coordinates
chr4:-:9323420..9324336
Molecular Weight (calculated)
18757.3 Da
IEP (calculated)
6.775
GRAVY (calculated)
-0.248
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSPVTLAPP SPEGFYAINN PFLVNGPKGF LEAKTLDNES YIRFDLPGVP RDGVTVLLDQ PNNTVNILAD APKEHKYDSS HRNYDGTKLR PKISVGGINT
101: KIPCKCCEFF SGFTSHMADG VLRLVLTTSH ASTRRPSCTC ISFLGGSDGE DRVGTATDGF PHATDPNGIH IIPL
101: KIPCKCCEFF SGFTSHMADG VLRLVLTTSH ASTRRPSCTC ISFLGGSDGE DRVGTATDGF PHATDPNGIH IIPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.