Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G03020.1 | Thale cress | cytosol | 82.76 | 75.29 |
| CDY09677 | Canola | extracellular | 34.48 | 58.39 |
| CDX90508 | Canola | extracellular | 34.48 | 56.74 |
| Bra012704.1-P | Field mustard | cytosol, extracellular, vacuole | 34.05 | 55.63 |
| AT4G16545.1 | Thale cress | cytosol | 61.64 | 54.58 |
| CDY40538 | Canola | cytosol | 61.64 | 53.96 |
| Bra038484.1-P | Field mustard | cytosol | 61.21 | 53.58 |
| CDY32265 | Canola | cytosol | 61.21 | 53.58 |
| CDY32266 | Canola | cytosol | 49.14 | 50.67 |
| Bra038485.1-P | Field mustard | cytosol | 47.84 | 49.33 |
| CDY40537 | Canola | cytosol | 47.84 | 49.33 |
| AT4G16555.1 | Thale cress | cytosol | 29.74 | 39.66 |
| AT4G16550.1 | Thale cress | cytosol | 35.78 | 31.09 |
| AT5G47590.1 | Thale cress | cytosol | 30.17 | 26.52 |
| AT4G16560.1 | Thale cress | cytosol | 39.22 | 17.11 |
Protein Annotations
| Gene3D:2.60.40.790 | MapMan:35.1 | EntrezGene:827353 | InterPro:A-crystallin/Hsp20_dom | ProteinID:AEE83767.1 | ArrayExpress:AT4G16540 |
| EnsemblPlantsGene:AT4G16540 | RefSeq:AT4G16540 | TAIR:AT4G16540 | RefSeq:AT4G16540-TAIR-G | EnsemblPlants:AT4G16540.1 | TAIR:AT4G16540.1 |
| ProteinID:CAB10430.1 | ProteinID:CAB78696.1 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 |
| RefSeq:NP_193387.1 | UniProt:O23498 | PIRSF:PIRSF030283 | PO:PO:0000293 | PFscan:PS01031 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF95 | SUPFAM:SSF49764 | InterPro:Small_heat_shock_prot_prd_pln | UniParc:UPI00000AB42A | : | : |
Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:O23498]
Coordinates
chr4:-:9315900..9317153
Molecular Weight (calculated)
25363.6 Da
IEP (calculated)
8.813
GRAVY (calculated)
-0.182
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVPLPARPQ SPEGFYAINN QFQTNGPKGF SELKILANGD MFVRMDLPGV PDEGGMSVYH NRSEESVVVY AKAPKIHTHD STERRYLTMT GIGCSCCAIS
101: SMTTHMSDGV FRLTLSKTRI DPNRSSCIDH FSDMKSLCFC QQFLVAQVSV KLPNGKLFVR ADMPGVPKEN FTVSVTNGRV KVTGEAPALS HDSSGRFYSG
201: DGAMLSTPVD IPSRRIKTIA KDGVIRLLIP PF
101: SMTTHMSDGV FRLTLSKTRI DPNRSSCIDH FSDMKSLCFC QQFLVAQVSV KLPNGKLFVR ADMPGVPKEN FTVSVTNGRV KVTGEAPALS HDSSGRFYSG
201: DGAMLSTPVD IPSRRIKTIA KDGVIRLLIP PF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.