CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038485.1-P	Field mustard	cytosol	97.33	97.33
CDY40537	Canola	cytosol	95.11	95.11
CDY09677	Canola	extracellular	36.44	59.85
CDX90508	Canola	extracellular	36.0	57.45
AT4G16540.1	Thale cress	cytosol	50.67	49.14
CDY40538	Canola	cytosol	56.0	47.55
CDY32265	Canola	cytosol	55.11	46.79
AT2G03020.1	Thale cress	cytosol	52.0	45.88
CDX90510	Canola	cytosol	51.11	43.89
CDY53640	Canola	cytosol	49.78	42.26
CDY09679	Canola	cytosol	46.67	42.17
CDY50850	Canola	cytosol	49.33	41.89
CDY63876	Canola	cytosol	44.44	38.46
CDY09678	Canola	cytosol	42.67	35.16
CDX90513	Canola	cytosol	38.67	34.8
CDY09681	Canola	cytosol	35.56	34.78
CDY09683	Canola	cytosol	20.89	34.06
CDY50905	Canola	cytosol	41.33	32.86
CDX90512	Canola	cytosol	36.0	32.66
CDX90509	Canola	cytosol	37.78	32.08
CDY46005	Canola	mitochondrion	23.56	31.93
CDY09703	Canola	plastid	35.56	31.37
CDX77779	Canola	cytosol	28.89	25.19
CDY17724	Canola	cytosol	27.56	24.6
CDX77784	Canola	cytosol	26.67	23.35
CDY67243	Canola	cytosol	18.22	23.03
CDY46006	Canola	cytosol	25.33	22.71
CDX77719	Canola	cytosol	23.11	22.71
CDY37166	Canola	cytosol	22.67	22.47
CDX87694	Canola	cytosol	19.56	22.45
CDX77721	Canola	cytosol	26.67	22.39
CDY56707	Canola	cytosol	26.22	22.35
CDY43629	Canola	cytosol	18.67	22.22
CDY41336	Canola	cytosol	26.22	22.18
CDX80270	Canola	cytosol	25.78	22.05
CDY37163	Canola	mitochondrion	18.67	21.43
CDX84467	Canola	cytosol	10.22	21.3
CDX77781	Canola	cytosol	24.44	21.24
CDY53682	Canola	cytosol	24.44	20.83
CDY17722	Canola	cytosol	23.11	20.0
CDY37164	Canola	mitochondrion	14.67	18.13
CDY33502	Canola	cytosol	21.33	18.11
CDY43630	Canola	cytosol	8.89	17.24
CDY33037	Canola	cytosol	25.78	17.21

Protein Annotations

EnsemblPlants:CDY32266	EnsemblPlantsGene:GSBRNA2T00051715001	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031	ProteinID:CDY32266	ProteinID:CDY32266.1
SUPFAM:SSF49764	UniParc:UPI0004EE3020	UniProt:A0A078H377	MapMan:35.1	:	:

Description

BnaA01g17180DBnaA01g17180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H377]

Coordinates

chrLK032290:-:373200..374071

Molecular Weight (calculated)

25078.9 Da

IEP (calculated)

6.025

GRAVY (calculated)

-0.230

Length

225 amino acids

Sequence
(BLAST)

001: MAAVPEGYYE STNPFLVHGP RGFEEFKLLE SFGMYVRMDF PGVPEECVRI SLDPAKKSLA VYADAPKVHR YDLAQRKYLS VIETVCSCCA FDRFTYQMSD
101: GVLRLHLSKS NIDQRRSSCI EFKYSAFGED ISGNDMDESY ESKQLEDGNL YVRLDMPGVP KDNFTVSVAN GKVNVTGQAP ALSHDSGSRL YSADVVMLSG
201: PVDFPSHRVK TIIKNGVIRL LVPPV

Best Arabidopsis Sequence Match ( AT4G16540.1 )
(BLAST)

001: MAVPLPARPQ SPEGFYAINN QFQTNGPKGF SELKILANGD MFVRMDLPGV PDEGGMSVYH NRSEESVVVY AKAPKIHTHD STERRYLTMT GIGCSCCAIS
101: SMTTHMSDGV FRLTLSKTRI DPNRSSCIDH FSDMKSLCFC QQFLVAQVSV KLPNGKLFVR ADMPGVPKEN FTVSVTNGRV KVTGEAPALS HDSSGRFYSG
201: DGAMLSTPVD IPSRRIKTIA KDGVIRLLIP PF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:O23498]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.