CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17724	Canola	cytosol	86.82	88.89
CDX77784	Canola	cytosol	62.79	63.03
CDY17722	Canola	cytosol	62.79	62.31
CDX77781	Canola	cytosol	61.63	61.39
CDY37163	Canola	mitochondrion	45.74	60.2
CDX84467	Canola	cytosol	25.19	60.19
CDX77719	Canola	cytosol	52.33	58.95
AT5G47590.1	Thale cress	cytosol	60.08	58.71
CDY37166	Canola	cytosol	51.16	58.15
CDX87694	Canola	cytosol	43.41	57.14
CDY53682	Canola	cytosol	58.14	56.82
CDX80270	Canola	cytosol	57.75	56.65
CDX77721	Canola	cytosol	57.36	55.22
CDY56707	Canola	cytosol	56.2	54.92
CDY41336	Canola	cytosol	56.59	54.89
CDY43629	Canola	cytosol	39.92	54.5
CDY67243	Canola	cytosol	37.6	54.49
CDY33502	Canola	cytosol	53.88	52.45
CDY37164	Canola	mitochondrion	36.05	51.1
CDY33037	Canola	cytosol	52.71	40.36
CDY43630	Canola	cytosol	17.44	38.79
CDX90510	Canola	cytosol	32.95	32.44
CDY50850	Canola	cytosol	32.17	31.32
CDY53640	Canola	cytosol	31.78	30.94
CDY09679	Canola	cytosol	29.84	30.92
CDY32265	Canola	cytosol	31.4	30.57
CDY09681	Canola	cytosol	27.13	30.43
CDX90512	Canola	cytosol	29.07	30.24
CDY40538	Canola	cytosol	30.23	29.43
CDY32266	Canola	cytosol	25.19	28.89
CDY40537	Canola	cytosol	25.19	28.89
CDY09703	Canola	plastid	27.91	28.24
CDX90513	Canola	cytosol	27.13	28.0
CDY09677	Canola	extracellular	14.73	27.74
CDY09678	Canola	cytosol	27.91	26.37
CDX90508	Canola	extracellular	14.34	26.24
CDY50905	Canola	cytosol	27.52	25.09
CDX90509	Canola	cytosol	25.58	24.91
CDY63876	Canola	cytosol	24.42	24.23
CDY09683	Canola	cytosol	12.4	23.19
CDY46005	Canola	mitochondrion	14.34	22.29
CDY46006	Canola	cytosol	19.77	20.32

Protein Annotations

EnsemblPlants:CDX77779	EnsemblPlantsGene:GSBRNA2T00128817001	Gene3D:2.60.40.790	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	ProteinID:CDX77779	ProteinID:CDX77779.1	SEG:seg	SUPFAM:SSF49764
UniParc:UPI0004EEBC2C	MapMan:35.1	:	:	:	:

Description

BnaC07g20330D

Coordinates

chrLK031812:-:1758132..1759240

Molecular Weight (calculated)

28347.8 Da

IEP (calculated)

8.126

GRAVY (calculated)

-0.450

Length

258 amino acids

Sequence
(BLAST)

001: MAMRECLDLT GIPYTREGIY ATNNQFQKAG PKGFIHVKVL ENDSLYVRVD LPGVPDDGVR HRVDGVRKKL VFFSGETPVG NRREGDREYS GSAGLGCDCC
101: EITGVDAKMK DGVLRMIVSR VKVKDHDNKC SHFLPPNTGK SGRHLEDHPF VVKGRKRAFV GVPLPGDGLY FAVDIPGVRG DDVEVLANER QVKFYAEVKN
201: VYEHDEGGGR VYLGCVNSRS SSSDPPPPSI LTQRVGYDAE FGVLKIVIAP RPNNTSSQ

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.