Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90513 | Canola | cytosol | 72.46 | 40.0 |
| CDY09677 | Canola | extracellular | 32.61 | 32.85 |
| CDX90508 | Canola | extracellular | 32.61 | 31.91 |
| CDY46005 | Canola | mitochondrion | 31.88 | 26.51 |
| CDX90512 | Canola | cytosol | 39.86 | 22.18 |
| CDY09703 | Canola | plastid | 40.58 | 21.96 |
| CDY32265 | Canola | cytosol | 40.58 | 21.13 |
| CDY32266 | Canola | cytosol | 34.06 | 20.89 |
| CDY09681 | Canola | cytosol | 34.78 | 20.87 |
| CDX90510 | Canola | cytosol | 39.13 | 20.61 |
| CDY09679 | Canola | cytosol | 36.96 | 20.48 |
| CDY40537 | Canola | cytosol | 33.33 | 20.44 |
| CDY40538 | Canola | cytosol | 39.13 | 20.38 |
| CDY50850 | Canola | cytosol | 39.13 | 20.38 |
| CDY53640 | Canola | cytosol | 39.13 | 20.38 |
| CDY63876 | Canola | cytosol | 34.06 | 18.08 |
| CDY50905 | Canola | cytosol | 34.06 | 16.61 |
| CDY09678 | Canola | cytosol | 31.88 | 16.12 |
| CDX84467 | Canola | cytosol | 12.32 | 15.74 |
| CDX90509 | Canola | cytosol | 28.99 | 15.09 |
| CDY43630 | Canola | cytosol | 12.32 | 14.66 |
| CDX77784 | Canola | cytosol | 24.64 | 13.23 |
| CDX77779 | Canola | cytosol | 23.19 | 12.4 |
| CDY43629 | Canola | cytosol | 16.67 | 12.17 |
| CDY53682 | Canola | cytosol | 23.19 | 12.12 |
| CDX77781 | Canola | cytosol | 22.46 | 11.97 |
| CDY17722 | Canola | cytosol | 22.46 | 11.92 |
| CDY17724 | Canola | cytosol | 21.74 | 11.9 |
| CDX80270 | Canola | cytosol | 22.46 | 11.79 |
| CDY37164 | Canola | mitochondrion | 15.22 | 11.54 |
| CDX87694 | Canola | cytosol | 15.94 | 11.22 |
| CDX77721 | Canola | cytosol | 21.74 | 11.19 |
| CDY56707 | Canola | cytosol | 21.01 | 10.98 |
| CDY41336 | Canola | cytosol | 21.01 | 10.9 |
| CDY33502 | Canola | cytosol | 18.84 | 9.81 |
| CDX77719 | Canola | cytosol | 15.22 | 9.17 |
| CDY37166 | Canola | cytosol | 14.49 | 8.81 |
| CDY33037 | Canola | cytosol | 20.29 | 8.31 |
| CDY67243 | Canola | cytosol | 8.7 | 6.74 |
| CDY37163 | Canola | mitochondrion | 6.52 | 4.59 |
| CDY46006 | Canola | cytosol | 5.8 | 3.19 |
Protein Annotations
| EnsemblPlants:CDY09683 | EnsemblPlantsGene:GSBRNA2T00031351001 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF95 | ProteinID:CDY09683 | ProteinID:CDY09683.1 | SUPFAM:SSF49764 | UniParc:UPI0004EE12AD | UniProt:A0A078FCC6 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC07g33780DBnaC07g33780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCC6]
Coordinates
chrLK031998:+:440646..441281
Molecular Weight (calculated)
14934.5 Da
IEP (calculated)
4.863
GRAVY (calculated)
-0.422
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPINNQDQI PNDQEEARHR FLHDTDNYAA EFTGPILLVH PDLLTEGLRM AYAYKQLQDG SAHVSLDMPG VPKGDFTAEI ENGRVIVTGR APAVSHDSNG
101: RFYSAVAATI SNPTGTNPLL TVEGGPENGV LRLNIRPG
101: RFYSAVAATI SNPTGTNPLL TVEGGPENGV LRLNIRPG
001: MVVPLRAIPS SREGFYAINN QFQANGPKGF MEFKMLENED MYVRIDFPGV PRDGVRVFLD QSKKAVCIFA DAPKEHKYDY SERNYGTSTG LVCKCCEISG
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B7R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.