CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74755
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	CDX74755	AT2G45660.1	21798944
AT5G47590.1	CDY27368	AT2G45660.1	21798944
AT5G47590.1	CDY37054	AT2G45660.1	21798944
AT5G47590.1	CDY53886	AT2G45660.1	21798944
AT5G47590.1	CDY60689	AT2G45660.1	21798944
AT5G47590.1	CDY69077	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80270	Canola	cytosol	65.58	84.03
CDY56707	Canola	cytosol	60.24	76.89
CDX77719	Canola	cytosol	51.63	75.98
CDY41336	Canola	cytosol	59.05	74.81
CDX77721	Canola	cytosol	58.16	73.13
CDY37163	Canola	mitochondrion	39.47	67.86
CDY43629	Canola	cytosol	35.91	64.02
CDY33502	Canola	cytosol	49.85	63.4
CDY53682	Canola	cytosol	49.55	63.26
CDY37164	Canola	mitochondrion	33.53	62.09
CDY37166	Canola	cytosol	41.54	61.67
CDX87694	Canola	cytosol	35.61	61.22
CDX84467	Canola	cytosol	18.4	57.41
CDY67243	Canola	cytosol	29.67	56.18
CDX77781	Canola	cytosol	42.73	55.6
CDX77784	Canola	cytosol	42.14	55.25
CDY17722	Canola	cytosol	42.14	54.62
Bra002567.1-P	Field mustard	cytosol	61.42	54.33
AT5G47590.1	Thale cress	cytosol	42.14	53.79
CDX77779	Canola	cytosol	40.36	52.71
CDY17724	Canola	cytosol	37.69	50.4
CDY43630	Canola	cytosol	14.24	41.38
CDY50850	Canola	cytosol	22.26	28.3
CDY53640	Canola	cytosol	21.96	27.92
CDY09681	Canola	cytosol	18.99	27.83
CDX90510	Canola	cytosol	21.36	27.48
CDY32265	Canola	cytosol	21.36	27.17
CDY40538	Canola	cytosol	20.47	26.04
CDY32266	Canola	cytosol	17.21	25.78
CDY09679	Canola	cytosol	18.99	25.7
CDY40537	Canola	cytosol	16.91	25.33
CDY09678	Canola	cytosol	20.18	24.91
CDY09677	Canola	extracellular	10.09	24.82
CDX90513	Canola	cytosol	18.4	24.8
CDY63876	Canola	cytosol	18.99	24.62
CDX90509	Canola	cytosol	18.99	24.15
CDY50905	Canola	cytosol	20.18	24.03
CDX90512	Canola	cytosol	17.21	23.39
CDX90508	Canola	extracellular	9.5	22.7
CDY09703	Canola	plastid	16.62	21.96
CDY46006	Canola	cytosol	15.43	20.72
CDY09683	Canola	cytosol	8.31	20.29
CDY46005	Canola	mitochondrion	9.5	19.28

Protein Annotations

EnsemblPlants:CDY33037	EnsemblPlantsGene:GSBRNA2T00053272001	Gene3D:2.60.40.790	InterPro:HSP20-like_chaperone	InterPro:IPR008978	InterPro:OSBP_sf
InterPro:Oxysterol-bd	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237	ProteinID:CDY33037	ProteinID:CDY33037.1
SUPFAM:SSF144000	SUPFAM:SSF49764	UniParc:UPI0004EE1C55	UniProt:A0A078H6L8	MapMan:35.1	:

Description

BnaA10g12430DBnaA10g12430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6L8]

Coordinates

chrLK032304:+:384003..388814

Molecular Weight (calculated)

37947.0 Da

IEP (calculated)

6.765

GRAVY (calculated)

-0.058

Length

337 amino acids

Sequence
(BLAST)

001: MATCIDMSRI PYIPGLLHAT NNPYQRYGPK GFMEIKVLHN DNLYVRVDLP GVPDDAIRYR VDAVRQKVVF FSGEETLRDG YKADDVREYS GTAGLGCDCC
101: EITGVEAKMK DGVLRMILAR VKVKDHDKKC THFLPLNTGK SGRYDVNSFN WVEVEGHPFV VKGRKDTLAS HRTSDGCYDF SVDMPGVCGD DMFVIPNENE
201: IKFYGENKEV YEHDESCRIF LGAVSNVQCY FMIFELLVVC FKLRLRLLLC VSPAFVFLAV TSHLKTKLLG NSVDVYPVGS LYIVKKDAVD LVPPLTKVHN
301: LIFGRTWVDS PGEMVMTNIT TGDKGLVLYF QPCGWFG

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.