CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90509	Canola	cytosol	71.06	73.21
AT4G16550.1	Thale cress	cytosol	54.21	55.43
CDY50905	Canola	cytosol	52.38	50.53
CDY09679	Canola	cytosol	44.69	49.0
CDX90510	Canola	cytosol	46.52	48.47
CDY46005	Canola	mitochondrion	29.3	48.19
CDY53640	Canola	cytosol	44.32	45.66
CDY50850	Canola	cytosol	43.96	45.28
CDY32265	Canola	cytosol	42.86	44.15
CDY09677	Canola	extracellular	21.98	43.8
CDY32266	Canola	cytosol	35.16	42.67
CDX90508	Canola	extracellular	21.98	42.55
CDY40537	Canola	cytosol	34.8	42.22
CDY40538	Canola	cytosol	39.93	41.13
CDY63876	Canola	cytosol	38.1	40.0
CDY09681	Canola	cytosol	32.6	38.7
CDX90513	Canola	cytosol	32.23	35.2
CDX90512	Canola	cytosol	31.87	35.08
CDY09703	Canola	plastid	30.77	32.94
CDY09683	Canola	cytosol	16.12	31.88
CDY46006	Canola	cytosol	27.84	30.28
AT4G16560.1	Thale cress	cytosol	58.97	30.26
CDY17724	Canola	cytosol	27.11	29.37
CDX77779	Canola	cytosol	26.37	27.91
CDX77781	Canola	cytosol	26.37	27.8
CDX77784	Canola	cytosol	26.01	27.63
CDY37163	Canola	mitochondrion	19.78	27.55
CDY17722	Canola	cytosol	26.01	27.31
CDX77719	Canola	cytosol	22.71	27.07
CDX80270	Canola	cytosol	25.64	26.62
CDX77721	Canola	cytosol	26.01	26.49
CDY43629	Canola	cytosol	18.32	26.45
CDY53682	Canola	cytosol	25.27	26.14
CDY41336	Canola	cytosol	25.27	25.94
CDY56707	Canola	cytosol	24.91	25.76
CDX87694	Canola	cytosol	18.32	25.51
CDY67243	Canola	cytosol	16.48	25.28
CDY37166	Canola	cytosol	20.15	24.23
CDY33502	Canola	cytosol	22.34	23.02
CDX84467	Canola	cytosol	8.79	22.22
CDY37164	Canola	mitochondrion	14.29	21.43
CDY33037	Canola	cytosol	24.91	20.18
CDY43630	Canola	cytosol	6.96	16.38

Protein Annotations

EnsemblPlants:CDY09678	EnsemblPlantsGene:GSBRNA2T00031346001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	ProteinID:CDY09678	ProteinID:CDY09678.1	SUPFAM:SSF49764	UniParc:UPI0004EE75DF	UniProt:A0A078FCC3
MapMan:35.1	:	:	:	:	:

Description

BnaC07g33830DBnaC07g33830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCC3]

Coordinates

chrLK031998:+:418385..420036

Molecular Weight (calculated)

29863.1 Da

IEP (calculated)

8.233

GRAVY (calculated)

-0.149

Length

273 amino acids

Sequence
(BLAST)

001: MPVMNIGPVP QSHDGFYARN NPYQVNGPKG FTEFKLMEEN EDLYARFDFP GVTKESVRIL VEPLKKAVFV FGDAPKEFRH DSSHRKYGAV TGLVCDCCEI
101: SNIQCFVGDG VVRLILSKKK INLHFPSSFG GATMPNVPFL ACVINGYNPE VAGGHPLAHL RGHNAEDPAF TGPVTLPHPS VLEGSTSAYE SKHLPNGGLF
201: LRIDMPGVPN DRFMMTVESD GGITVIGRAP PALHDSSGRE YRGKVAVVPL AYDNRRIKVI AKHGVIRLII PPF

Best Arabidopsis Sequence Match ( AT4G16550.1 )
(BLAST)

001: MSIPHIAPVP HPRDGYYATN NPYQVNGPKG FTEFKYLEET HDLFVRLDFP GIQKESVIIL LEPSKKAVIV TGEAPKESKH DSSHRKYGTA TGLICDCCEI
101: SNIQCFVGDG VVRLILSKQK INLRVPIFCS FGGARMPTDA SPNIIRGYNP EVAGGHPLAH LRGLNPEGCR GTDPFDPAFT GPTIRPHPSV LEGSTSAYET
201: KQLSNGGLYL RIDMPGVPSD GFIVAVDGNG VVTIMGRAPA TMHDSSGRSY VCKVAIVPRG YAGVGSR

Arabidopsis Description

HSP20-like chaperone [Source:TAIR;Acc:AT4G16550]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.