Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G16550.1 | Thale cress | cytosol | 39.85 | 79.4 |
| CDY09678 | Canola | cytosol | 30.26 | 58.97 |
| CDX90509 | Canola | cytosol | 25.94 | 52.08 |
| AT4G16545.1 | Thale cress | cytosol | 23.12 | 46.95 |
| AT2G03020.1 | Thale cress | cytosol | 20.68 | 43.14 |
| AT4G16540.1 | Thale cress | cytosol | 17.11 | 39.22 |
| AT4G16555.1 | Thale cress | cytosol | 10.53 | 32.18 |
| AT5G47590.1 | Thale cress | cytosol | 13.16 | 26.52 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827355 | InterPro:A-crystallin/Hsp20_dom | ProteinID:AEE83769.1 | ArrayExpress:AT4G16560 | EnsemblPlantsGene:AT4G16560 |
| RefSeq:AT4G16560 | TAIR:AT4G16560 | RefSeq:AT4G16560-TAIR-G | EnsemblPlants:AT4G16560.1 | TAIR:AT4G16560.1 | Unigene:At.54362 |
| ProteinID:CAB10432.1 | ProteinID:CAB78698.1 | UniProt:F4JMH9 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | RefSeq:NP_567505.1 | PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF95 | SUPFAM:SSF49764 |
| UniParc:UPI0000162A86 | : | : | : | : | : |
Description
Putative 57 kDa heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:F4JMH9]
Coordinates
chr4:-:9324746..9328628
Molecular Weight (calculated)
57524.4 Da
IEP (calculated)
7.891
GRAVY (calculated)
-0.108
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIPHIAPVP HPRDGYYATN NPYQVNGPKG FTEFKYLEET HDLFVRLDFP GIQKESVIIL LEPSKKAVIV TGEAPKESKH DSSHRKYGTA TGLICDCCEI
101: SNIQCFVGDG VVRLILSKQK INLRVPIFCS CKITNLQNVL FFCLIFVGGA RMPTDASPNI IRGYNPEDLS VELLLETSLR CFSIVNVSDI FHGFVLLIPI
201: VAVAGGHPLA HLRGLNPEGC RGTDPFDPAF TGPTIRPHPS VLEGSTSAYE TKQLSNGGLY LRIDMPGVPS DGFIVAVDGN GVVTIMGRAP ATMHDSNGFY
301: AMNNPYQANG PKGFAEFNQE RDCGYPLTLL EPSKKAVTVT GDAAKSSKHD ASNRNNNIHT FVEDGVVRLI LSKKKIYPHA PNFCSFGGAT IPTGDAPVAD
401: GTPYVNLLAH FRGLIPKGRR CTDPGDPAFT GPVVLPHPSV LEGPMMPYET KQLSNGGLYM RVDMPGVPSE KFMVAVDGDG VVTIMGRAPV TMHDTSGRTY
501: VAKVANVPRG YDGGRIKLVP KHGVIRLTIP SN
101: SNIQCFVGDG VVRLILSKQK INLRVPIFCS CKITNLQNVL FFCLIFVGGA RMPTDASPNI IRGYNPEDLS VELLLETSLR CFSIVNVSDI FHGFVLLIPI
201: VAVAGGHPLA HLRGLNPEGC RGTDPFDPAF TGPTIRPHPS VLEGSTSAYE TKQLSNGGLY LRIDMPGVPS DGFIVAVDGN GVVTIMGRAP ATMHDSNGFY
301: AMNNPYQANG PKGFAEFNQE RDCGYPLTLL EPSKKAVTVT GDAAKSSKHD ASNRNNNIHT FVEDGVVRLI LSKKKIYPHA PNFCSFGGAT IPTGDAPVAD
401: GTPYVNLLAH FRGLIPKGRR CTDPGDPAFT GPVVLPHPSV LEGPMMPYET KQLSNGGLYM RVDMPGVPSE KFMVAVDGDG VVTIMGRAPV TMHDTSGRTY
501: VAKVANVPRG YDGGRIKLVP KHGVIRLTIP SN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.