Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G16540.1 | Thale cress | cytosol | 75.29 | 82.76 |
| CDY09677 | Canola | extracellular | 34.51 | 64.23 |
| Bra012704.1-P | Field mustard | cytosol, extracellular, vacuole | 34.9 | 62.68 |
| CDX90508 | Canola | extracellular | 34.51 | 62.41 |
| AT4G16545.1 | Thale cress | cytosol | 63.92 | 62.21 |
| Bra038484.1-P | Field mustard | cytosol | 62.35 | 60.0 |
| CDY32265 | Canola | cytosol | 62.35 | 60.0 |
| CDY40538 | Canola | cytosol | 61.18 | 58.87 |
| CDY32266 | Canola | cytosol | 45.88 | 52.0 |
| Bra038485.1-P | Field mustard | cytosol | 44.71 | 50.67 |
| CDY40537 | Canola | cytosol | 44.71 | 50.67 |
| AT4G16555.1 | Thale cress | cytosol | 28.24 | 41.38 |
| AT4G16550.1 | Thale cress | cytosol | 39.22 | 37.45 |
| AT5G47590.1 | Thale cress | cytosol | 29.41 | 28.41 |
| AT4G16560.1 | Thale cress | cytosol | 43.14 | 20.68 |
Protein Annotations
| Gene3D:2.60.40.790 | MapMan:35.1 | EntrezGene:814831 | InterPro:A-crystallin/Hsp20_dom | UniProt:A0A178VY92 | ProteinID:AEC05655.1 |
| ArrayExpress:AT2G03020 | EnsemblPlantsGene:AT2G03020 | RefSeq:AT2G03020 | TAIR:AT2G03020 | RefSeq:AT2G03020-TAIR-G | EnsemblPlants:AT2G03020.1 |
| TAIR:AT2G03020.1 | EMBL:AY219083 | Unigene:At.41438 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | RefSeq:NP_178402.2 | ProteinID:OAP11299.1 | PIRSF:PIRSF030283 | PO:PO:0000293 | PFscan:PS01031 |
| PANTHER:PTHR11527 | PANTHER:PTHR11527:SF95 | UniProt:Q84X24 | SUPFAM:SSF49764 | InterPro:Small_heat_shock_prot_prd_pln | UniParc:UPI0000006982 |
Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
Coordinates
chr2:-:882645..884164
Molecular Weight (calculated)
27726.4 Da
IEP (calculated)
8.990
GRAVY (calculated)
-0.248
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.