Factsheet for Bra012704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 2
plastid 1
cytosol 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09677	Canola	extracellular	85.92	89.05
CDX90508	Canola	extracellular	82.39	82.98
AT2G03020.1	Thale cress	cytosol	62.68	34.9
Bra038485.1-P	Field mustard	cytosol	54.23	34.22
AT4G16540.1	Thale cress	cytosol	55.63	34.05
Bra038484.1-P	Field mustard	cytosol	61.27	32.83
Bra040740.1-P	Field mustard	cytosol	54.23	30.2
Bra022080.1-P	Field mustard	cytosol	21.13	27.52
Bra012708.1-P	Field mustard	cytosol	39.44	22.4
Bra008244.1-P	Field mustard	cytosol	42.96	21.55
Bra012707.1-P	Field mustard	cytosol	35.21	20.33
Bra012705.1-P	Field mustard	cytosol	54.23	19.3
Bra022085.2-P	Field mustard	cytosol	21.13	18.52
Bra022079.1-P	Field mustard	cytosol	23.24	16.42
Bra022083.1-P	Field mustard	cytosol	21.13	16.04
Bra024932.1-P	Field mustard	cytosol	27.46	15.48
Bra034108.1-P	Field mustard	cytosol	23.94	14.47
Bra022051.1-P	Field mustard	cytosol	26.06	14.34
Bra024976.1-P	Field mustard	cytosol	24.65	13.16
Bra024930.1-P	Field mustard	cytosol	23.94	13.08
Bra002567.1-P	Field mustard	cytosol	20.42	7.61

Protein Annotations

EnsemblPlants:Bra012704.1	EnsemblPlants:Bra012704.1-P	EnsemblPlantsGene:Bra012704	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031
SEG:seg	SUPFAM:SSF49764	UniParc:UPI00025408C5	UniProt:M4D894	MapMan:35.1	:

Description

AT2G03020 (E=2e-037) | heat shock protein-related

Coordinates

chrA03:-:22635282..22635958

Molecular Weight (calculated)

15231.6 Da

IEP (calculated)

9.438

GRAVY (calculated)

0.080

Length

142 amino acids

Sequence
(BLAST)

001: MSDGVVRLVL SKTCTDPPPA STYRSLLLSL LKMYLLFSLS DLVGLSGDNT DDHGKVYESK QLENGSLYVR LDMPGVPKDN FAVTVANGIV KVTGQAPSVS
101: HDSAGRFYSG DVAMLSAPVN IPSRRIKTIA KNGVIRLLIP PL

Best Arabidopsis Sequence Match ( AT4G16540.1 )
(BLAST)

001: MAVPLPARPQ SPEGFYAINN QFQTNGPKGF SELKILANGD MFVRMDLPGV PDEGGMSVYH NRSEESVVVY AKAPKIHTHD STERRYLTMT GIGCSCCAIS
101: SMTTHMSDGV FRLTLSKTRI DPNRSSCIDH FSDMKSLCFC QQFLVAQVSV KLPNGKLFVR ADMPGVPKEN FTVSVTNGRV KVTGEAPALS HDSSGRFYSG
201: DGAMLSTPVD IPSRRIKTIA KDGVIRLLIP PF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:O23498]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.